RNA–Protein interactions for RNA: ENST00000337354.8

SEC13-201, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SEC13, Length 1,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-201ENST00000337354 DCAF4Q8WV16 495 aa18.01■□□□□ 0.47
SEC13-201ENST00000337354 PARK7Q99497 189 aaKnown RBP18.01■□□□□ 0.47
SEC13-201ENST00000337354 LY9Q9HBG7 655 aa18.01■□□□□ 0.47
SEC13-201ENST00000337354 ZFYVE28Q9HCC9 887 aa18.01■□□□□ 0.47
SEC13-201ENST00000337354 PRDM10Q9NQV6 1147 aa18.01■□□□□ 0.47
SEC13-201ENST00000337354 PTPRFP10586 1907 aa18.01■□□□□ 0.47
SEC13-201ENST00000337354 SNHG28P0DPA3 235 aa18■□□□□ 0.47
SEC13-201ENST00000337354 BMP3P12645 472 aa18■□□□□ 0.47
SEC13-201ENST00000337354 IRX3P78415 501 aaPredicted RBP18■□□□□ 0.47
SEC13-201ENST00000337354 FGD1P98174 961 aa18■□□□□ 0.47
SEC13-201ENST00000337354 COL9A3Q14050 684 aaPredicted RBP18■□□□□ 0.47
SEC13-201ENST00000337354 COG2Q14746 738 aa18■□□□□ 0.47
SEC13-201ENST00000337354 TAF1CQ15572 869 aaPredicted RBP18■□□□□ 0.47
SEC13-201ENST00000337354 CATIPQ7Z7H3 387 aa18■□□□□ 0.47
SEC13-201ENST00000337354 SGMS1Q86VZ5 419 aa18■□□□□ 0.47
SEC13-201ENST00000337354 CCDC69A6NI79 296 aa17.99■□□□□ 0.47
SEC13-201ENST00000337354 PLA2G6O60733 806 aa17.99■□□□□ 0.47
SEC13-201ENST00000337354 PDHBP11177 359 aa17.99■□□□□ 0.47
SEC13-201ENST00000337354 GPATCH4Q5T3I0 446 aaKnown RBP17.99■□□□□ 0.47
SEC13-201ENST00000337354 GTF3C2Q8WUA4 911 aaPredicted RBP17.99■□□□□ 0.47
SEC13-201ENST00000337354 MAP3K14Q99558 947 aa17.99■□□□□ 0.47
SEC13-201ENST00000337354 AGXT2Q9BYV1 514 aa17.99■□□□□ 0.47
SEC13-201ENST00000337354 ASCC2Q9H1I8 757 aaPredicted RBP17.99■□□□□ 0.47
SEC13-201ENST00000337354 FEM1BQ9UK73 627 aa17.99■□□□□ 0.47
SEC13-201ENST00000337354 MYPNQ86TC9 1320 aa17.99■□□□□ 0.47
SEC13-201ENST00000337354 GREB1LQ9C091 1923 aaPredicted RBP17.98■□□□□ 0.47
SEC13-201ENST00000337354 TLR2O60603 784 aa17.98■□□□□ 0.47
SEC13-201ENST00000337354 GCLCP48506 637 aaPredicted RBP17.98■□□□□ 0.47
SEC13-201ENST00000337354 FAM83BQ5T0W9 1011 aa17.98■□□□□ 0.47
SEC13-201ENST00000337354 LBX2Q6XYB7 198 aa17.98■□□□□ 0.47
SEC13-201ENST00000337354 SYNE3Q6ZMZ3 975 aa17.98■□□□□ 0.47
SEC13-201ENST00000337354 NFXL1Q6ZNB6 911 aa17.98■□□□□ 0.47
SEC13-201ENST00000337354 CHURC1Q8WUH1 139 aa17.98■□□□□ 0.47
SEC13-201ENST00000337354 TANGO6Q9C0B7 1094 aa17.98■□□□□ 0.47
SEC13-201ENST00000337354 ALDH8A1Q9H2A2 487 aaPredicted RBP17.98■□□□□ 0.47
SEC13-201ENST00000337354 SLC12A7Q9Y666 1083 aa17.98■□□□□ 0.47
SEC13-201ENST00000337354 FLOT1O75955 427 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 DDAH1O94760 285 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 CALM1P0DP23 149 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 CALM2P0DP24 149 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 CALM3P0DP25 149 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 CYP2C8P10632 490 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 CPA1P15085 419 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 TROAPQ12815 778 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 Q6ZUG5 572 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 FAM160B2Q86V87 743 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 PRPF38AQ8NAV1 312 aaKnown RBP17.97■□□□□ 0.47
SEC13-201ENST00000337354 SMCR8Q8TEV9 937 aaPredicted RBP17.97■□□□□ 0.47
SEC13-201ENST00000337354 TCEANC2Q96MN5 208 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 TBC1D32Q96NH3 1257 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 P2RX7Q99572 595 aaKnown RBP17.97■□□□□ 0.47
SEC13-201ENST00000337354 LRRC2Q9BYS8 371 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 UPF3BQ9BZI7 483 aaKnown RBP17.97■□□□□ 0.47
SEC13-201ENST00000337354 PDRG1Q9NUG6 133 aa17.97■□□□□ 0.47
SEC13-201ENST00000337354 TBC1D8O95759 1140 aa17.96■□□□□ 0.47
SEC13-201ENST00000337354 FDX1P10109 184 aa17.96■□□□□ 0.47
SEC13-201ENST00000337354 DSG3P32926 999 aa17.96■□□□□ 0.47
SEC13-201ENST00000337354 STAT2P52630 851 aa17.96■□□□□ 0.47
SEC13-201ENST00000337354 ZNF543Q08ER8 600 aa17.96■□□□□ 0.47
SEC13-201ENST00000337354 CRHR2Q13324 411 aa17.96■□□□□ 0.47
SEC13-201ENST00000337354 ASPRV1Q53RT3 343 aa17.96■□□□□ 0.47
SEC13-201ENST00000337354 NOM1Q5C9Z4 860 aaKnown RBP17.96■□□□□ 0.47
SEC13-201ENST00000337354 NUP88Q99567 741 aaPredicted RBP17.96■□□□□ 0.47
SEC13-201ENST00000337354 SENP2Q9HC62 589 aa17.96■□□□□ 0.47
SEC13-201ENST00000337354 GPHNQ9NQX3 736 aaPredicted RBP17.96■□□□□ 0.47
SEC13-201ENST00000337354 MTMR7Q9Y216 660 aa17.96■□□□□ 0.47
SEC13-201ENST00000337354 TMEM232C9JQI7 657 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 PARP1P09874 1014 aaKnown RBP17.95■□□□□ 0.46
SEC13-201ENST00000337354 RCAN1P53805 252 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 EVCP57679 992 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 HERVK_113P62684 666 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 ANKRD1Q15327 319 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 CCDC96Q2M329 555 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 BTNL9Q6UXG8 535 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 KCTD1Q719H9 257 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 ZNF654Q8IZM8 581 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 TNS4Q8IZW8 715 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 MB21D1Q8N884 522 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 SLF1Q9BQI6 1058 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 PPP1R9AQ9ULJ8 1098 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 ADAMTS5Q9UNA0 930 aa17.95■□□□□ 0.46
SEC13-201ENST00000337354 KIF5BP33176 963 aa17.94■□□□□ 0.46
SEC13-201ENST00000337354 NEK4P51957 841 aa17.94■□□□□ 0.46
SEC13-201ENST00000337354 PPP2R5BQ15173 497 aa17.94■□□□□ 0.46
SEC13-201ENST00000337354 C17orf99Q6UX52 265 aa17.94■□□□□ 0.46
SEC13-201ENST00000337354 BRF1Q92994 677 aa17.94■□□□□ 0.46
SEC13-201ENST00000337354 KIF2CQ99661 725 aa17.94■□□□□ 0.46
SEC13-201ENST00000337354 ISY1Q9ULR0 285 aaKnown RBP17.94■□□□□ 0.46
SEC13-201ENST00000337354 LOC285556D6RIA3 1793 aa17.94■□□□□ 0.46
SEC13-201ENST00000337354 PALM3A6NDB9 673 aaPredicted RBP17.93■□□□□ 0.46
SEC13-201ENST00000337354 SPDYE16A6NNV3 312 aaPredicted RBP17.93■□□□□ 0.46
SEC13-201ENST00000337354 GNAQP50148 359 aa17.93■□□□□ 0.46
SEC13-201ENST00000337354 IKQ13123 557 aaPredicted RBP17.93■□□□□ 0.46
SEC13-201ENST00000337354 GRM4Q14833 912 aa17.93■□□□□ 0.46
SEC13-201ENST00000337354 APOA5Q6Q788 366 aa17.93■□□□□ 0.46
SEC13-201ENST00000337354 CTCFLQ8NI51 663 aaPredicted RBP17.93■□□□□ 0.46
SEC13-201ENST00000337354 NUP133Q8WUM0 1156 aa17.93■□□□□ 0.46
SEC13-201ENST00000337354 RABGAP1Q9Y3P9 1069 aa17.93■□□□□ 0.46
SEC13-201ENST00000337354 KLF18A0A0U1RQI7 1052 aa17.92■□□□□ 0.46
SEC13-201ENST00000337354 ZBTB43O43298 467 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms