RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 TNFAIP3P21580 790 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 WHAMMQ8TF30 809 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 MCUR1Q96AQ8 359 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 GOLGA8QA0A0J9YX86 632 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 GOLGA8OA6NCC3 632 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 GOLGA8NF8WBI6 632 aa11.38□□□□□ -0.59
CCDC88A-202ENST00000336838 VIMP08670 466 aaKnown RBP11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 ARID5AQ03989 594 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 ARHGEF10LQ9HCE6 1279 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 B4E1Z4 1266 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 RNF10Q8N5U6 811 aaKnown RBP11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 GBP7Q8N8V2 638 aaPredicted RBP11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 CCHCR1Q8TD31 782 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 DNM3Q9UQ16 869 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 ANXA1P04083 346 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 HPDP32754 393 aaPredicted RBP11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 LARSQ9P2J5 1176 aaKnown RBP11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 LCMT1Q9UIC8 334 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 MAGEA1P43355 309 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 KLHL30Q0D2K2 578 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 ORC2Q13416 577 aaPredicted RBP11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 GLE1Q53GS7 698 aaKnown RBP11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 GMNNO75496 209 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 DCAF17Q5H9S7 520 aaPredicted RBP11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 KCNK9Q9NPC2 374 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 SLC8A3P57103 927 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 RAB3IL1Q8TBN0 382 aa11.37□□□□□ -0.59
CCDC88A-202ENST00000336838 ZNF174Q15697 407 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 BEND3Q5T5X7 828 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 G2E3Q7L622 706 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 RGS16O15492 202 aaPredicted RBP11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 RAB11FIP4Q86YS3 637 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 KLHL14Q9P2G3 628 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 RCOR1Q9UKL0 485 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 PCDHA7Q9UN72 937 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 EIF3BP55884 814 aaKnown RBP11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 VPS16Q9H269 839 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 LMNB1P20700 586 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 PCK1P35558 622 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 PHLDB3Q6NSJ2 640 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 PIK3AP1Q6ZUJ8 805 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 TRIM11Q96F44 468 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 ZSCAN10Q96SZ4 725 aaPredicted RBP11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 FAN1Q9Y2M0 1017 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 CUL1Q13616 776 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 PLCB3Q01970 1234 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 DBNDD2Q9BQY9 259 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 Q9H521 79 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 EFCC1Q9HA90 598 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 TPCN1Q9ULQ1 816 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 CTNNA1P35221 906 aaKnown RBP11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 CLNS1AP54105 237 aaKnown RBP11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 EMBQ6PCB8 327 aa11.36□□□□□ -0.59
CCDC88A-202ENST00000336838 IGSF1Q8N6C5 1336 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 INO80Q9ULG1 1556 aaPredicted RBP11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 FAM114A2Q9NRY5 505 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 LRWD1Q9UFC0 647 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 LETM2Q2VYF4 491 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 CHST3Q7LGC8 479 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 RWDD2AQ9UIY3 292 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 MYO3AQ8NEV4 1616 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 HSPD1P10809 573 aaKnown RBP11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 HAUS1Q96CS2 278 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 NRKQ7Z2Y5 1582 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 KRT71Q3SY84 523 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 ZNF654Q8IZM8 581 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 RBM17Q96I25 401 aaKnown RBP11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 SUCLG2Q96I99 432 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 JRKLQ9Y4A0 524 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 EPN1Q9Y6I3 576 aaPredicted RBP11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 STAT1P42224 750 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 ARL6IP4Q66PJ3 421 aaKnown RBP11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 THEGQ9P2T0 379 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 PNOCQ13519 176 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 CEP85LQ5SZL2 805 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 PPP4R3CPQ6ZMV5 832 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 ATP8A2Q9NTI2 1148 aa11.35□□□□□ -0.59
CCDC88A-202ENST00000336838 ZNF579Q8NAF0 562 aaKnown RBP11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 NCOA5Q9HCD5 579 aaKnown RBP11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 C2CD5Q86YS7 1000 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 ACTR5Q9H9F9 607 aaPredicted RBP11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 PASKQ96RG2 1323 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 ZNF532Q9HCE3 1301 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 E7EVH7 732 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 TROVE2P10155 538 aaKnown RBP eCLIP11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 ZMYM1Q5SVZ6 1142 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 CCDC25Q86WR0 208 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 TUBB6Q9BUF5 446 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 PCDHB13Q9Y5F0 798 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 V9GY48 417 aaPredicted RBP11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 IGSF3O75054 1194 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 HIP1RO75146 1068 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 NBPF9Q3BBW0 867 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 CCDC63Q8NA47 563 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 SMC1BQ8NDV3 1235 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 PDLIM2Q96JY6 352 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 STK36Q9NRP7 1315 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 CTSWP56202 376 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 SLC39A6Q13433 755 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 MYOCDQ8IZQ8 938 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms