RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ATG4CQ96DT6 458 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 ADAMTS5Q9UNA0 930 aa18.74■□□□□ 0.59
CLN3-201ENST00000333496 TNRC18O15417 2968 aaPredicted RBP18.73■□□□□ 0.59
CLN3-201ENST00000333496 MAPK4P31152 587 aa18.73■□□□□ 0.59
CLN3-201ENST00000333496 TOMM22Q9NS69 142 aa18.73■□□□□ 0.59
CLN3-201ENST00000333496 SYNPO2Q9UMS6 1093 aa18.73■□□□□ 0.59
CLN3-201ENST00000333496 NEDD4P46934 1319 aa18.72■□□□□ 0.59
CLN3-201ENST00000333496 SGSM2O43147 1006 aa18.72■□□□□ 0.59
CLN3-201ENST00000333496 ADCY3O60266 1144 aa18.72■□□□□ 0.59
CLN3-201ENST00000333496 PCP11498 1178 aaKnown RBP18.72■□□□□ 0.59
CLN3-201ENST00000333496 PTH1RQ03431 593 aa18.72■□□□□ 0.59
CLN3-201ENST00000333496 MFSD6Q6ZSS7 791 aa18.72■□□□□ 0.59
CLN3-201ENST00000333496 GPR142Q7Z601 462 aa18.72■□□□□ 0.59
CLN3-201ENST00000333496 GMCL1P1Q8NEA9 526 aa18.72■□□□□ 0.59
CLN3-201ENST00000333496 RUFY2Q8WXA3 655 aa18.72■□□□□ 0.59
CLN3-201ENST00000333496 STX8Q9UNK0 236 aa18.72■□□□□ 0.59
CLN3-201ENST00000333496 POTEFA5A3E0 1075 aa18.71■□□□□ 0.59
CLN3-201ENST00000333496 ELNP15502 786 aa18.71■□□□□ 0.59
CLN3-201ENST00000333496 SAMD1Q6SPF0 538 aaPredicted RBP18.71■□□□□ 0.59
CLN3-201ENST00000333496 SLAIN1Q8ND83 568 aa18.71■□□□□ 0.59
CLN3-201ENST00000333496 PXYLP1Q8TE99 480 aa18.71■□□□□ 0.59
CLN3-201ENST00000333496 PPP1R9AQ9ULJ8 1098 aa18.71■□□□□ 0.59
CLN3-201ENST00000333496 MYCP01106 439 aaPredicted RBP18.71■□□□□ 0.58
CLN3-201ENST00000333496 CCNA1P78396 465 aa18.71■□□□□ 0.58
CLN3-201ENST00000333496 MTFR1Q15390 333 aa18.71■□□□□ 0.58
CLN3-201ENST00000333496 MORN1Q5T089 497 aa18.71■□□□□ 0.58
CLN3-201ENST00000333496 MB21D1Q8N884 522 aa18.71■□□□□ 0.58
CLN3-201ENST00000333496 USP6NLQ92738 828 aa18.71■□□□□ 0.58
CLN3-201ENST00000333496 MOV10L1Q9BXT6 1211 aaKnown RBP18.71■□□□□ 0.58
CLN3-201ENST00000333496 SPATC1LQ9H0A9 340 aa18.71■□□□□ 0.58
CLN3-201ENST00000333496 TCP11L1Q9NUJ3 509 aa18.71■□□□□ 0.58
CLN3-201ENST00000333496 TMEM132BQ14DG7 1078 aa18.7■□□□□ 0.58
CLN3-201ENST00000333496 BMP2KLQ5H9B9 411 aa18.7■□□□□ 0.58
CLN3-201ENST00000333496 SLFN13Q68D06 897 aa18.7■□□□□ 0.58
CLN3-201ENST00000333496 PLEKHH3Q7Z736 793 aa18.7■□□□□ 0.58
CLN3-201ENST00000333496 RNF41Q9H4P4 317 aaPredicted RBP18.7■□□□□ 0.58
CLN3-201ENST00000333496 CTNNA3Q9UI47 895 aa18.7■□□□□ 0.58
CLN3-201ENST00000333496 VWA5AO00534 786 aa18.69■□□□□ 0.58
CLN3-201ENST00000333496 IMMTQ16891 758 aaKnown RBP18.69■□□□□ 0.58
CLN3-201ENST00000333496 PPP4R3BQ5MIZ7 849 aa18.69■□□□□ 0.58
CLN3-201ENST00000333496 RASGRP2Q7LDG7 609 aa18.69■□□□□ 0.58
CLN3-201ENST00000333496 CCAR1Q8IX12 1150 aaKnown RBP18.69■□□□□ 0.58
CLN3-201ENST00000333496 REPS2Q8NFH8 660 aa18.69■□□□□ 0.58
CLN3-201ENST00000333496 NUDT12Q9BQG2 462 aa18.69■□□□□ 0.58
CLN3-201ENST00000333496 CYP2B6P20813 491 aa18.68■□□□□ 0.58
CLN3-201ENST00000333496 RCSD1Q6JBY9 416 aa18.68■□□□□ 0.58
CLN3-201ENST00000333496 SOCS4Q8WXH5 440 aa18.68■□□□□ 0.58
CLN3-201ENST00000333496 SLF1Q9BQI6 1058 aa18.68■□□□□ 0.58
CLN3-201ENST00000333496 PPP4R2Q9NY27 417 aa18.68■□□□□ 0.58
CLN3-201ENST00000333496 ZNF236Q9UL36 1845 aa18.68■□□□□ 0.58
CLN3-201ENST00000333496 SMCHD1A6NHR9 2005 aa18.68■□□□□ 0.58
CLN3-201ENST00000333496 BMP3P12645 472 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 ERCC3P19447 782 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 PTPREP23469 700 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 PLS1Q14651 629 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 WDR78Q5VTH9 848 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 PRPF38AQ8NAV1 312 aaKnown RBP18.67■□□□□ 0.58
CLN3-201ENST00000333496 ESR2Q92731 530 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 CHMP4CQ96CF2 233 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 GMCL1Q96IK5 515 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 TMEM47Q9BQJ4 181 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 BIN2Q9UBW5 565 aaPredicted RBP18.67■□□□□ 0.58
CLN3-201ENST00000333496 ZNF214Q9UL59 606 aaPredicted RBP18.67■□□□□ 0.58
CLN3-201ENST00000333496 PLXNA1Q9UIW2 1896 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 B4E1Z4 1266 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 INHAP05111 366 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 MCCP23508 829 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 SHCBP1Q8NEM2 672 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 TRIB2Q92519 343 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 ZKSCAN3Q9BRR0 538 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 FEM1BQ9UK73 627 aa18.67■□□□□ 0.58
CLN3-201ENST00000333496 KDM4AO75164 1064 aa18.66■□□□□ 0.58
CLN3-201ENST00000333496 CYP21A2P08686 494 aa18.66■□□□□ 0.58
CLN3-201ENST00000333496 XRCC5P13010 732 aaKnown RBP18.66■□□□□ 0.58
CLN3-201ENST00000333496 EN2P19622 333 aaPredicted RBP18.66■□□□□ 0.58
CLN3-201ENST00000333496 TRIM32Q13049 653 aa18.66■□□□□ 0.58
CLN3-201ENST00000333496 GRB14Q14449 540 aa18.66■□□□□ 0.58
CLN3-201ENST00000333496 MAP4K1Q92918 833 aa18.66■□□□□ 0.58
CLN3-201ENST00000333496 TMEM106CQ9BVX2 250 aa18.66■□□□□ 0.58
CLN3-201ENST00000333496 TSHZ2Q9NRE2 1034 aa18.66■□□□□ 0.58
CLN3-201ENST00000333496 ZSWIM5Q9P217 1185 aa18.66■□□□□ 0.58
CLN3-201ENST00000333496 SLC15A5A6NIM6 579 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 TMEM232C9JQI7 657 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 TOP1P11387 765 aaKnown RBP18.65■□□□□ 0.58
CLN3-201ENST00000333496 CCL5P13501 91 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 SLC1A4P43007 532 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 UBXN2AP68543 259 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 MAP2K5Q13163 448 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 KCTD1Q719H9 257 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 RIOX2Q8IUF8 465 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 KIFC2Q96AC6 838 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 TTC14Q96N46 770 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 ESYT1Q9BSJ8 1104 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 UNC93B1Q9H1C4 597 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 CWC22Q9HCG8 908 aaKnown RBP18.65■□□□□ 0.58
CLN3-201ENST00000333496 TAF6LQ9Y6J9 622 aa18.65■□□□□ 0.58
CLN3-201ENST00000333496 STAT3P40763 770 aa18.64■□□□□ 0.57
CLN3-201ENST00000333496 RGS2P41220 211 aa18.64■□□□□ 0.57
CLN3-201ENST00000333496 MLLT1Q03111 559 aaPredicted RBP18.64■□□□□ 0.57
CLN3-201ENST00000333496 CCL14Q16627 93 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms