RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 NMT2O60551 498 aa16.52■□□□□ 0.24
LIMS1-201ENST00000332345 CDC45O75419 566 aa16.52■□□□□ 0.24
LIMS1-201ENST00000332345 NOVP48745 357 aa16.52■□□□□ 0.24
LIMS1-201ENST00000332345 TRDNQ13061 729 aa16.52■□□□□ 0.24
LIMS1-201ENST00000332345 SLFN13Q68D06 897 aa16.52■□□□□ 0.24
LIMS1-201ENST00000332345 LRRC47Q8N1G4 583 aaKnown RBP16.52■□□□□ 0.24
LIMS1-201ENST00000332345 CWC22Q9HCG8 908 aaKnown RBP16.52■□□□□ 0.24
LIMS1-201ENST00000332345 KDM4AO75164 1064 aa16.51■□□□□ 0.23
LIMS1-201ENST00000332345 TOP1P11387 765 aaKnown RBP16.51■□□□□ 0.23
LIMS1-201ENST00000332345 BMP3P12645 472 aa16.51■□□□□ 0.23
LIMS1-201ENST00000332345 POTEEQ6S8J3 1075 aa16.51■□□□□ 0.23
LIMS1-201ENST00000332345 SAMD1Q6SPF0 538 aaPredicted RBP16.51■□□□□ 0.23
LIMS1-201ENST00000332345 PRPF38AQ8NAV1 312 aaKnown RBP16.51■□□□□ 0.23
LIMS1-201ENST00000332345 BTBD7Q9P203 1132 aa16.51■□□□□ 0.23
LIMS1-201ENST00000332345 ZSWIM5Q9P217 1185 aa16.51■□□□□ 0.23
LIMS1-201ENST00000332345 FEM1BQ9UK73 627 aa16.51■□□□□ 0.23
LIMS1-201ENST00000332345 PTCH2Q9Y6C5 1203 aa16.51■□□□□ 0.23
LIMS1-201ENST00000332345 LAMA4Q16363 1823 aa16.51■□□□□ 0.23
LIMS1-201ENST00000332345 NEDD4P46934 1319 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 ZSWIM8A7E2V4 1837 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 PEX10O60683 326 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 CAPN15O75808 1086 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 CNMDO75829 334 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 SLC1A4P43007 532 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 FLT3LGP49771 235 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 PRKCZQ05513 592 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 SLC9C1Q4G0N8 1177 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 DGKHQ86XP1 1220 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 CHURC1Q8WUH1 139 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 ATG4CQ96DT6 458 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 GMCL1Q96IK5 515 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 NUP88Q99567 741 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-201ENST00000332345 PPP1R9AQ9ULJ8 1098 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 ADAMTS5Q9UNA0 930 aa16.5■□□□□ 0.23
LIMS1-201ENST00000332345 RLFQ13129 1914 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 B4E1Z4 1266 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 CYP21A2P08686 494 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 MCCP23508 829 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 PLS1Q14651 629 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 RCSD1Q6JBY9 416 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 PLEKHH3Q7Z736 793 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 SLF1Q9BQI6 1058 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 TMEM47Q9BQJ4 181 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 LSG1Q9H089 658 aaKnown RBP16.49■□□□□ 0.23
LIMS1-201ENST00000332345 SPATC1LQ9H0A9 340 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 ANO2Q9NQ90 1003 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 FBXO28Q9NVF7 368 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 ISY1Q9ULR0 285 aaKnown RBP16.49■□□□□ 0.23
LIMS1-201ENST00000332345 GABRQQ9UN88 632 aa16.49■□□□□ 0.23
LIMS1-201ENST00000332345 CTDP1Q9Y5B0 961 aaPredicted RBP16.49■□□□□ 0.23
LIMS1-201ENST00000332345 RBM8AQ9Y5S9 174 aaKnown RBP16.49■□□□□ 0.23
LIMS1-201ENST00000332345 VWA5AO00534 786 aa16.48■□□□□ 0.23
LIMS1-201ENST00000332345 ZBED4O75132 1171 aa16.48■□□□□ 0.23
LIMS1-201ENST00000332345 GRK4P32298 578 aa16.48■□□□□ 0.23
LIMS1-201ENST00000332345 IRF5Q13568 498 aa16.48■□□□□ 0.23
LIMS1-201ENST00000332345 WDR78Q5VTH9 848 aa16.48■□□□□ 0.23
LIMS1-201ENST00000332345 ZSCAN10Q96SZ4 725 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-201ENST00000332345 NUDT12Q9BQG2 462 aa16.48■□□□□ 0.23
LIMS1-201ENST00000332345 ZKSCAN3Q9BRR0 538 aa16.48■□□□□ 0.23
LIMS1-201ENST00000332345 PORCNQ9H237 461 aa16.48■□□□□ 0.23
LIMS1-201ENST00000332345 GJD2Q9UKL4 321 aa16.48■□□□□ 0.23
LIMS1-201ENST00000332345 TMEM232C9JQI7 657 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 ADCY3O60266 1144 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 SLC25A27O95847 323 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 FDX1P10109 184 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 STAT2P52630 851 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 IKQ13123 557 aaPredicted RBP16.47■□□□□ 0.23
LIMS1-201ENST00000332345 GPR142Q7Z601 462 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 RALYLQ86SE5 291 aaKnown RBP16.47■□□□□ 0.23
LIMS1-201ENST00000332345 FAM160B2Q86V87 743 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 SLAIN1Q8ND83 568 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 NCOA7Q8NI08 942 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 PXYLP1Q8TE99 480 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 DCAF4Q8WV16 495 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 SOCS4Q8WXH5 440 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 ANKS1AQ92625 1134 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 KIFC2Q96AC6 838 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 ARMC5Q96C12 935 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 UBAC1Q9BSL1 405 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 BIN2Q9UBW5 565 aaPredicted RBP16.47■□□□□ 0.23
LIMS1-201ENST00000332345 MTMR7Q9Y216 660 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 IVNS1ABPQ9Y6Y0 642 aa16.47■□□□□ 0.23
LIMS1-201ENST00000332345 E7EWF7 191 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 STRNO43815 780 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 PLA2G6O60733 806 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 STAT3P40763 770 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 TMEM132BQ14DG7 1078 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 RNF20Q5VTR2 975 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 SHCBP1Q8NEM2 672 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 NKX2-3Q8TAU0 364 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 CHMP4CQ96CF2 233 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 MOV10L1Q9BXT6 1211 aaKnown RBP16.46■□□□□ 0.23
LIMS1-201ENST00000332345 MROH8Q9H579 483 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 KAT14Q9H8E8 782 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 PARP14Q460N5 1801 aa16.46■□□□□ 0.23
LIMS1-201ENST00000332345 CENPFP49454 3210 aa16.45■□□□□ 0.22
LIMS1-201ENST00000332345 SLC15A5A6NIM6 579 aa16.45■□□□□ 0.22
LIMS1-201ENST00000332345 ERCC3P19447 782 aa16.45■□□□□ 0.22
LIMS1-201ENST00000332345 COPB2P35606 906 aa16.45■□□□□ 0.22
LIMS1-201ENST00000332345 UBXN2AP68543 259 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms