RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 MYO1BO43795 1136 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 BBOX1O75936 387 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 TRIM37O94972 964 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 CDK11BP21127 795 aaKnown RBP16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 CALML3P27482 149 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 CDK8P49336 464 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 WWC2Q6AWC2 1192 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 ARID3AQ99856 593 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 TCP11L1Q9NUJ3 509 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 PCDHA4Q9UN74 947 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 PAXBP1Q9Y5B6 917 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 POLRMTO00411 1230 aaKnown RBP16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 TOP1P11387 765 aaKnown RBP16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 KLHL10Q6JEL2 608 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 HEATR3Q7Z4Q2 680 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 SMYD4Q8IYR2 804 aaPredicted RBP16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 CCDC34Q96HJ3 373 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 EYA3Q99504 573 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 SNED1Q8TER0 1413 aa16.91■□□□□ 0.3
CLCNKA-201ENST00000331433 CTIFO43310 598 aaKnown RBP16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 CD44P16070 742 aaKnown RBP16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 RHBDL3P58872 404 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 DPYDQ12882 1025 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 KCND1Q9NSA2 647 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 CDC25AP30304 524 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 HOXA10P31260 410 aaPredicted RBP16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 GNAQP50148 359 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 STX17P56962 302 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 CCDC178Q5BJE1 867 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 C16orf86Q6ZW13 317 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 CCDC112Q8NEF3 446 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 PPP1R13BQ96KQ4 1090 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 SH3GLB2Q9NR46 395 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 PODXL2Q9NZ53 605 aa16.9■□□□□ 0.3
CLCNKA-201ENST00000331433 GOLGB1Q14789 3259 aaKnown RBP16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 PALM3A6NDB9 673 aaPredicted RBP16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 NT5C2P49902 561 aa16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 E2F4Q16254 413 aa16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 SLC27A3Q5K4L6 730 aa16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 BLZF1Q9H2G9 400 aa16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 QTRT2Q9H974 415 aaKnown RBP16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 DDX60LQ5H9U9 1706 aaKnown RBP16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 RIMBP2O15034 1052 aa16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 NRDCO43847 1150 aa16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 C4orf32Q8N8J7 132 aa16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 MAP7D2Q96T17 732 aa16.89■□□□□ 0.29
CLCNKA-201ENST00000331433 CCDC194A0A1B0GVG4 234 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 M0R2N6 131 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 ERCC5P28715 1186 aaPredicted RBP16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 GTF2IP78347 998 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 DHX8Q14562 1220 aaKnown RBP16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 IQUBQ8NA54 791 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 ZNF287Q9HBT7 754 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 PCDHA6Q9UN73 950 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 PCDHA8Q9Y5H6 950 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 KLRF2D3W0D1 207 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 STXBP3O00186 592 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 PLCG2P16885 1265 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 CERS3Q8IU89 383 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 GSDMAQ96QA5 445 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 CRAMP1Q96RY5 1269 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 MTRQ99707 1265 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 BARHL2Q9NY43 387 aa16.88■□□□□ 0.29
CLCNKA-201ENST00000331433 MYH1P12882 1939 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 CUL4BQ13620 913 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 INF2Q27J81 1249 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 PDXDC2PQ6P474 469 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 USP17L2Q6R6M4 530 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 NEDD1Q8NHV4 660 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 CEP95Q96GE4 821 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 GAKO14976 1311 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 SYNRGQ9UMZ2 1314 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 F8W031 263 aaPredicted RBP16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 PPEF1O14829 653 aaPredicted RBP16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 COBLO75128 1261 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 PROM2Q8N271 834 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 TBC1D22AQ8WUA7 517 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 FAM163AQ96GL9 167 aaPredicted RBP16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 TMX1Q9H3N1 280 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 DAGLAQ9Y4D2 1042 aa16.87■□□□□ 0.29
CLCNKA-201ENST00000331433 PSDA5PKW4 1024 aaPredicted RBP16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 KCNJ6P48051 423 aa16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 NAA30Q147X3 362 aaPredicted RBP16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 ARL6IP4Q66PJ3 421 aaKnown RBP16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 MTERF4Q7Z6M4 381 aaKnown RBP16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 HOMER1Q86YM7 354 aa16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 CCDC148Q8NFR7 591 aa16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 TMEM60Q9H2L4 133 aa16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 KLRG2A4D1S0 409 aaPredicted RBP16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 PPP1R3GB7ZBB8 358 aa16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 PICALMQ13492 652 aa16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 KARSQ15046 597 aaKnown RBP16.86■□□□□ 0.29
CLCNKA-201ENST00000331433 PP2D1A8MPX8 630 aa16.85■□□□□ 0.29
CLCNKA-201ENST00000331433 PARP1P09874 1014 aaKnown RBP16.85■□□□□ 0.29
CLCNKA-201ENST00000331433 TBX2Q13207 712 aaPredicted RBP16.85■□□□□ 0.29
CLCNKA-201ENST00000331433 SPATA1Q5VX52 437 aa16.85■□□□□ 0.29
CLCNKA-201ENST00000331433 SPECC1LQ69YQ0 1117 aa16.85■□□□□ 0.29
CLCNKA-201ENST00000331433 KRT27Q7Z3Y8 459 aa16.85■□□□□ 0.29
CLCNKA-201ENST00000331433 SLF2Q8IX21 1173 aa16.85■□□□□ 0.29
CLCNKA-201ENST00000331433 KIF18AQ8NI77 898 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms