RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 BAG2O95816 211 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 PPP2R5DQ14738 602 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 C16orf87Q6PH81 154 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 VTI1AQ96AJ9 217 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 PCDHB15Q9Y5E8 787 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 TTC19Q6DKK2 380 aaPredicted RBP15.65■□□□□ 0.1
COL7A1-201ENST00000328333 ARHGAP10A1A4S6 786 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 LRRC43Q8N309 656 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 INTS9Q9NV88 658 aaKnown RBP15.65■□□□□ 0.1
COL7A1-201ENST00000328333 KRT80Q6KB66 452 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 KRT25Q7Z3Z0 450 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 NYXQ9GZU5 481 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 PPP2R2CQ9Y2T4 447 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 ABCC1P33527 1531 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 ABCD1P33897 745 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 LONRF2Q1L5Z9 754 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 MAD1L1Q9Y6D9 718 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 ATP6V1E1P36543 226 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 SLFNL1Q499Z3 407 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 KIAA1468Q9P260 1216 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 KIAA0586Q9BVV6 1533 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 ADCY8P40145 1251 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 ANKFY1Q9P2R3 1169 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 DNMT1P26358 1616 aaKnown RBP15.64■□□□□ 0.09
COL7A1-201ENST00000328333 GSTA1P08263 222 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 GSTA2P09210 222 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 MTX1Q13505 466 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 ADALQ6DHV7 355 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 MORC4Q8TE76 937 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 EMBQ6PCB8 327 aa15.64■□□□□ 0.09
COL7A1-201ENST00000328333 KCNJ18B7U540 433 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 ADGRL1O94910 1474 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 KCNJ12Q14500 433 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 MYO5CQ9NQX4 1742 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 GABPAQ06546 454 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 ZNF215Q9UL58 517 aaPredicted RBP15.63■□□□□ 0.09
COL7A1-201ENST00000328333 ATF2P15336 505 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 NEK2P51955 445 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 UPF3AQ9H1J1 476 aaKnown RBP15.63■□□□□ 0.09
COL7A1-201ENST00000328333 FAM96AQ9H5X1 160 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 COPG1Q9Y678 874 aaKnown RBP15.63■□□□□ 0.09
COL7A1-201ENST00000328333 TSHZ3Q63HK5 1081 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 KLHL7Q8IXQ5 586 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 MGARPQ8TDB4 240 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 BABAM1Q9NWV8 329 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 LINS1Q8NG48 757 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 VPS16Q9H269 839 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 EIF4G3O43432 1585 aaKnown RBP15.63■□□□□ 0.09
COL7A1-201ENST00000328333 CCT5P48643 541 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 ANKRD35Q8N283 1001 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 MYL1P05976 194 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 RINT1Q6NUQ1 792 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 TM6SF1Q9BZW5 370 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 TRPC6Q9Y210 931 aa15.63■□□□□ 0.09
COL7A1-201ENST00000328333 MYH8P13535 1937 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 LAMC3Q9Y6N6 1575 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 FAM69CQ0P6D2 419 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 MAPKBP1O60336 1514 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 CEP85Q6P2H3 762 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 IFNL2Q8IZJ0 200 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 PTCD1O75127 700 aaKnown RBP15.62■□□□□ 0.09
COL7A1-201ENST00000328333 ANKRD2Q9GZV1 360 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 IPO5O00410 1097 aaKnown RBP15.62■□□□□ 0.09
COL7A1-201ENST00000328333 CALCRLQ16602 461 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 LRRC2Q9BYS8 371 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 ZBTB40Q9NUA8 1239 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 H7C1D1 291 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 ATP1A2P50993 1020 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 RAB20Q9NX57 234 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 PAIP2BQ9ULR5 123 aaKnown RBP15.62■□□□□ 0.09
COL7A1-201ENST00000328333 RGS12O14924 1447 aa15.62■□□□□ 0.09
COL7A1-201ENST00000328333 APLFQ8IW19 511 aaPredicted RBP15.62■□□□□ 0.09
COL7A1-201ENST00000328333 XPO4Q9C0E2 1151 aaKnown RBP15.62■□□□□ 0.09
COL7A1-201ENST00000328333 PPP2R5AQ15172 486 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 MRPL44Q9H9J2 332 aaKnown RBP15.61■□□□□ 0.09
COL7A1-201ENST00000328333 CDC23Q9UJX2 597 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 AFAP1Q8N556 730 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 CUEDC2Q9H467 287 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 CHUKO15111 745 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 SRGAP2BP0DMP2 458 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 GALNT17Q6IS24 598 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 MAP7D3Q8IWC1 876 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 TEKT2Q9UIF3 430 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 STAM2O75886 525 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 GUCY2FP51841 1108 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 DPH6Q7L8W6 267 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 TRAPPC8Q9Y2L5 1435 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 TTLL12Q14166 644 aaPredicted RBP15.61■□□□□ 0.09
COL7A1-201ENST00000328333 TTC38Q5R3I4 469 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 OCA2Q04671 838 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 NDE1Q9NXR1 346 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 LCMT1Q9UIC8 334 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 NUB1Q9Y5A7 615 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 UGGT2Q9NYU1 1516 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 WASLO00401 505 aaPredicted RBP15.61■□□□□ 0.09
COL7A1-201ENST00000328333 DISP3Q9P2K9 1392 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 PRAG1Q86YV5 1406 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 EEF1GP26641 437 aaKnown RBP15.61■□□□□ 0.09
COL7A1-201ENST00000328333 DRP2Q13474 957 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 TADA2BQ86TJ2 420 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms