RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 CHAMP1Q96JM3 812 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 UBE2Q2LH0YL09 131 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 PPP1R12BO60237 982 aaPredicted RBP11.61□□□□□ -0.55
HMGB3-201ENST00000325307 BAG4O95429 457 aaKnown RBP11.61□□□□□ -0.55
HMGB3-201ENST00000325307 ECE1P42892 770 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 FERMT3Q86UX7 667 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 SIAH1Q8IUQ4 282 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 SPICE1Q8N0Z3 855 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 CPVLQ9H3G5 476 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 VAT1LQ9HCJ6 419 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 RRAGDQ9NQL2 400 aaPredicted RBP11.61□□□□□ -0.55
HMGB3-201ENST00000325307 POLR2AP24928 1970 aaKnown RBP11.61□□□□□ -0.55
HMGB3-201ENST00000325307 RRP9O43818 475 aaKnown RBP11.61□□□□□ -0.55
HMGB3-201ENST00000325307 DEXIO95424 95 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 POTEIP0CG38 1075 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 POTEJP0CG39 1038 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 CHRM1P11229 460 aaPredicted RBP11.61□□□□□ -0.55
HMGB3-201ENST00000325307 IKQ13123 557 aaPredicted RBP11.61□□□□□ -0.55
HMGB3-201ENST00000325307 ASPRV1Q53RT3 343 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 OTUD7BQ6GQQ9 843 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 KCTD1Q719H9 257 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 CDC37L1Q7L3B6 337 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 MKL1Q969V6 931 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 RNF26Q9BY78 433 aaPredicted RBP11.61□□□□□ -0.55
HMGB3-201ENST00000325307 MTMR6Q9Y217 621 aa11.61□□□□□ -0.55
HMGB3-201ENST00000325307 F5H6K3 240 aa11.6□□□□□ -0.55
HMGB3-201ENST00000325307 KLRC3Q07444 240 aa11.6□□□□□ -0.55
HMGB3-201ENST00000325307 MAP1SQ66K74 1059 aaPredicted RBP11.6□□□□□ -0.55
HMGB3-201ENST00000325307 NBPF11Q86T75 865 aa11.6□□□□□ -0.55
HMGB3-201ENST00000325307 CDCA5Q96FF9 252 aa11.6□□□□□ -0.55
HMGB3-201ENST00000325307 LZTS2Q9BRK4 669 aa11.6□□□□□ -0.55
HMGB3-201ENST00000325307 UBA5Q9GZZ9 404 aa11.6□□□□□ -0.55
HMGB3-201ENST00000325307 SH2D4AQ9H788 454 aa11.6□□□□□ -0.55
HMGB3-201ENST00000325307 STK36Q9NRP7 1315 aa11.6□□□□□ -0.55
HMGB3-201ENST00000325307 A0A1W2PRG0 241 aa11.6□□□□□ -0.55
HMGB3-201ENST00000325307 PALM3A6NDB9 673 aaPredicted RBP11.6□□□□□ -0.55
HMGB3-201ENST00000325307 GOPCQ9HD26 462 aa11.6□□□□□ -0.55
HMGB3-201ENST00000325307 GJB4Q9NTQ9 266 aa11.6□□□□□ -0.55
HMGB3-201ENST00000325307 HOMER1Q86YM7 354 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 SCYL3Q8IZE3 742 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 ZNF408Q9H9D4 720 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 NMRK2Q9NPI5 230 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 CNTNAP5Q8WYK1 1306 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 SCN4AP35499 1836 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 FSD2A1L4K1 749 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 PRPF3O43395 683 aaKnown RBP11.59□□□□□ -0.55
HMGB3-201ENST00000325307 NDUFB10O96000 172 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 ZNF543Q08ER8 600 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 FUT2Q10981 343 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 GNL2Q13823 731 aaKnown RBP11.59□□□□□ -0.55
HMGB3-201ENST00000325307 GPATCH4Q5T3I0 446 aaKnown RBP11.59□□□□□ -0.55
HMGB3-201ENST00000325307 KLRG1Q96E93 195 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 GBP4Q96PP9 640 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 NUP88Q99567 741 aaPredicted RBP11.59□□□□□ -0.55
HMGB3-201ENST00000325307 GZF1Q9H116 711 aaPredicted RBP11.59□□□□□ -0.55
HMGB3-201ENST00000325307 F13A1P00488 732 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 XBP1P17861 261 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 DCAF4Q8WV16 495 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 TMX2Q9Y320 296 aa11.59□□□□□ -0.55
HMGB3-201ENST00000325307 BAZ2BQ9UIF8 2168 aaKnown RBP11.59□□□□□ -0.55
HMGB3-201ENST00000325307 SLC16A2P36021 539 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 IREB2P48200 963 aaKnown RBP11.58□□□□□ -0.56
HMGB3-201ENST00000325307 GMCL1P1Q8NEA9 526 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 GINM1Q9NU53 330 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 SEC63Q9UGP8 760 aaKnown RBP11.58□□□□□ -0.56
HMGB3-201ENST00000325307 ZNF112Q9UJU3 913 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 CSADQ9Y600 493 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 USP2O75604 605 aaPredicted RBP11.58□□□□□ -0.56
HMGB3-201ENST00000325307 TTBK2Q6IQ55 1244 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 FBXO18Q8NFZ0 1043 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 RRP36Q96EU6 259 aaKnown RBP11.58□□□□□ -0.56
HMGB3-201ENST00000325307 WDR90Q96KV7 1748 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 RBM27Q9P2N5 1060 aaKnown RBP11.58□□□□□ -0.56
HMGB3-201ENST00000325307 ATP6V1DQ9Y5K8 247 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 GREB1LQ9C091 1923 aaPredicted RBP11.58□□□□□ -0.56
HMGB3-201ENST00000325307 MYH4Q9Y623 1939 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 SSC5DA1L4H1 1573 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 SNHG28P0DPA3 235 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 NCLP19338 710 aaKnown RBP11.58□□□□□ -0.56
HMGB3-201ENST00000325307 KRT40Q6A162 431 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 BBXQ8WY36 941 aaPredicted RBP11.58□□□□□ -0.56
HMGB3-201ENST00000325307 ZHX2Q9Y6X8 837 aa11.58□□□□□ -0.56
HMGB3-201ENST00000325307 BMP3P12645 472 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 MAP3K9P80192 1104 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 SPZ1Q9BXG8 430 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 AS3MTQ9HBK9 375 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 VPS54Q9P1Q0 977 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 TRIM75PA6NK02 468 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 TMEM232C9JQI7 657 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 CYTH3O43739 400 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 SCG2P13521 617 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 PTPRAP18433 802 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 SPP2Q13103 211 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 SAFBQ15424 915 aaKnown RBP eCLIP11.57□□□□□ -0.56
HMGB3-201ENST00000325307 HEATR3Q7Z4Q2 680 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.57□□□□□ -0.567e-9■■■■■ 29.8
HMGB3-201ENST00000325307 VCPKMTQ9H867 229 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 BCCIPQ9P287 314 aaKnown RBP eCLIP11.57□□□□□ -0.56
HMGB3-201ENST00000325307 KCNJ14Q9UNX9 436 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 TRAF5O00463 557 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms