RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 DDX4Q9NQI0 724 aaKnown RBP18.13■□□□□ 0.49
USH1C-202ENST00000318024 TSPY2A6NKD2 308 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 GOLGA8AA7E2F4 631 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 EFCAB8A8MWE9 144 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 DHX16O60231 1041 aaKnown RBP18.13■□□□□ 0.49
USH1C-202ENST00000318024 TPM4P67936 248 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 KIF23Q02241 960 aaPredicted RBP18.13■□□□□ 0.49
USH1C-202ENST00000318024 SEC23AQ15436 765 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 ANO1Q5XXA6 986 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 CDC42EP5Q6NZY7 148 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 IQCA1Q86XH1 822 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 CCDC82Q8N4S0 544 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 PHKBQ93100 1093 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 C8orf76Q96K31 380 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 PSMD1Q99460 953 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 SGIP1Q9BQI5 828 aa18.13■□□□□ 0.49
USH1C-202ENST00000318024 SCN9AQ15858 1988 aa18.12■□□□□ 0.49
USH1C-202ENST00000318024 VWA3AA6NCI4 1184 aa18.12■□□□□ 0.49
USH1C-202ENST00000318024 NRDCO43847 1150 aa18.12■□□□□ 0.49
USH1C-202ENST00000318024 CAPN2P17655 700 aa18.12■□□□□ 0.49
USH1C-202ENST00000318024 SLC20A2Q08357 652 aa18.12■□□□□ 0.49
USH1C-202ENST00000318024 SF3A1Q15459 793 aaKnown RBP18.12■□□□□ 0.49
USH1C-202ENST00000318024 SYNE3Q6ZMZ3 975 aa18.12■□□□□ 0.49
USH1C-202ENST00000318024 CERS3Q8IU89 383 aa18.12■□□□□ 0.49
USH1C-202ENST00000318024 VSTM4Q8IW00 320 aa18.12■□□□□ 0.49
USH1C-202ENST00000318024 CMTR1Q8N1G2 835 aaKnown RBP18.12■□□□□ 0.49
USH1C-202ENST00000318024 UBXN4Q92575 508 aa18.12■□□□□ 0.49
USH1C-202ENST00000318024 FAM217BQ9NTX9 383 aaPredicted RBP18.12■□□□□ 0.49
USH1C-202ENST00000318024 ORC4O43929 436 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 PTGER2P43116 358 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 TFAP4Q01664 338 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 HHIPL2Q6UWX4 724 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 BBXQ8WY36 941 aaPredicted RBP18.11■□□□□ 0.49
USH1C-202ENST00000318024 GJB4Q9NTQ9 266 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 BCS1LQ9Y276 419 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 SASH3O75995 380 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 TBC1D8O95759 1140 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 PCP11498 1178 aaKnown RBP18.11■□□□□ 0.49
USH1C-202ENST00000318024 HNRNPH2P55795 449 aaKnown RBP18.11■□□□□ 0.49
USH1C-202ENST00000318024 NFIAQ12857 509 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 SLC39A14Q15043 492 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 IFIT1BQ5T764 474 aaKnown RBP18.11■□□□□ 0.49
USH1C-202ENST00000318024 TMCO3Q6UWJ1 677 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 HOMER1Q86YM7 354 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 INTS13Q9NVM9 706 aa18.11■□□□□ 0.49
USH1C-202ENST00000318024 UBE2Q2LH0YL09 131 aa18.1■□□□□ 0.49
USH1C-202ENST00000318024 ZRSR1Q15695 479 aaKnown RBP18.1■□□□□ 0.49
USH1C-202ENST00000318024 CARD6Q9BX69 1037 aa18.1■□□□□ 0.49
USH1C-202ENST00000318024 ZBTB12Q9Y330 459 aaPredicted RBP18.1■□□□□ 0.49
USH1C-202ENST00000318024 UBASH3AP57075 661 aa18.1■□□□□ 0.49
USH1C-202ENST00000318024 TBX2Q13207 712 aaPredicted RBP18.1■□□□□ 0.49
USH1C-202ENST00000318024 ZNF654Q8IZM8 581 aa18.1■□□□□ 0.49
USH1C-202ENST00000318024 TMTC2Q8N394 836 aa18.1■□□□□ 0.49
USH1C-202ENST00000318024 ARGLU1Q9NWB6 273 aaPredicted RBP18.1■□□□□ 0.49
USH1C-202ENST00000318024 PSMD14O00487 310 aa18.09■□□□□ 0.49
USH1C-202ENST00000318024 SLURP2P0DP57 97 aa18.09■□□□□ 0.49
USH1C-202ENST00000318024 MAP3K9P80192 1104 aa18.09■□□□□ 0.49
USH1C-202ENST00000318024 MYL5Q02045 173 aa18.09■□□□□ 0.49
USH1C-202ENST00000318024 TCP10Q12799 353 aa18.09■□□□□ 0.49
USH1C-202ENST00000318024 PTPAQ15257 358 aa18.09■□□□□ 0.49
USH1C-202ENST00000318024 GRIPAP1Q4V328 841 aa18.09■□□□□ 0.49
USH1C-202ENST00000318024 ZFPM1Q8IX07 1006 aa18.09■□□□□ 0.49
USH1C-202ENST00000318024 AIFM3Q96NN9 605 aa18.09■□□□□ 0.49
USH1C-202ENST00000318024 KIAA1551Q9HCM1 1747 aa18.09■□□□□ 0.49
USH1C-202ENST00000318024 TMEM232C9JQI7 657 aa18.08■□□□□ 0.49
USH1C-202ENST00000318024 MYO1BO43795 1136 aa18.08■□□□□ 0.49
USH1C-202ENST00000318024 SEC31AO94979 1220 aaKnown RBP18.08■□□□□ 0.49
USH1C-202ENST00000318024 SHC4Q6S5L8 630 aa18.08■□□□□ 0.49
USH1C-202ENST00000318024 RSRC2Q7L4I2 434 aaKnown RBP18.08■□□□□ 0.49
USH1C-202ENST00000318024 ZNF444Q8N0Y2 327 aaPredicted RBP18.08■□□□□ 0.49
USH1C-202ENST00000318024 NLGN2Q8NFZ4 835 aa18.08■□□□□ 0.49
USH1C-202ENST00000318024 ZDHHC15Q96MV8 337 aa18.08■□□□□ 0.49
USH1C-202ENST00000318024 COL4A5P29400 1685 aa18.08■□□□□ 0.49
USH1C-202ENST00000318024 CBFA2T2O43439 604 aa18.08■□□□□ 0.48
USH1C-202ENST00000318024 TPM1P09493 284 aa18.08■□□□□ 0.48
USH1C-202ENST00000318024 CDK8P49336 464 aa18.08■□□□□ 0.48
USH1C-202ENST00000318024 NTRK3Q16288 839 aa18.08■□□□□ 0.48
USH1C-202ENST00000318024 CC2D1AQ6P1N0 951 aaPredicted RBP18.08■□□□□ 0.48
USH1C-202ENST00000318024 MTA3Q9BTC8 594 aa18.08■□□□□ 0.48
USH1C-202ENST00000318024 IL17RBQ9NRM6 502 aa18.08■□□□□ 0.48
USH1C-202ENST00000318024 ADAMTSL1Q8N6G6 1762 aa18.08■□□□□ 0.48
USH1C-202ENST00000318024 DLEC1Q9Y238 1755 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 PPP6R2O75170 966 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 URI1O94763 535 aaPredicted RBP18.07■□□□□ 0.48
USH1C-202ENST00000318024 TSPY3P0CV98 308 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 TSPY8P0CW00 308 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 FKBP1AP62942 108 aaKnown RBP18.07■□□□□ 0.48
USH1C-202ENST00000318024 RTN1Q16799 776 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 FOXP4Q8IVH2 680 aaPredicted RBP18.07■□□□□ 0.48
USH1C-202ENST00000318024 FANCBQ8NB91 859 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 PPP2R2CQ9Y2T4 447 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 ARHGAP6O43182 974 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 RASA1P20936 1047 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 IARSP41252 1262 aaKnown RBP18.07■□□□□ 0.48
USH1C-202ENST00000318024 SYKP43405 635 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 GOLGA8FQ08AF8 430 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 GOLGA8DPQ0D2H9 430 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 SOGA3Q5TF21 947 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 ISM2Q6H9L7 571 aa18.07■□□□□ 0.48
USH1C-202ENST00000318024 MUM1L1Q5H9M0 696 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms