RNA–Protein interactions for RNA: ENST00000308077.9

PTCD2-201, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 1 (best)

Gene PTCD2, Length 2,195 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-201ENST00000308077 RNF26Q9BY78 433 aaPredicted RBP8.08□□□□□ -1.12
PTCD2-201ENST00000308077 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.08□□□□□ -1.12
PTCD2-201ENST00000308077 GDPD2Q9HCC8 539 aa8.08□□□□□ -1.12
PTCD2-201ENST00000308077 LMBRD1Q9NUN5 540 aa8.08□□□□□ -1.12
PTCD2-201ENST00000308077 CLIP2Q9UDT6 1046 aa8.08□□□□□ -1.12
PTCD2-201ENST00000308077 HERC5Q9UII4 1024 aaKnown RBP8.08□□□□□ -1.12
PTCD2-201ENST00000308077 HACL1Q9UJ83 578 aa8.08□□□□□ -1.12
PTCD2-201ENST00000308077 BAZ2BQ9UIF8 2168 aaKnown RBP8.08□□□□□ -1.12
PTCD2-201ENST00000308077 PALM3A6NDB9 673 aaPredicted RBP8.07□□□□□ -1.12
PTCD2-201ENST00000308077 KIF28PB7ZC32 967 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 PRPF3O43395 683 aaKnown RBP8.07□□□□□ -1.12
PTCD2-201ENST00000308077 DEXIO95424 95 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 TTLL1O95922 423 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 HIRAP54198 1017 aaPredicted RBP8.07□□□□□ -1.12
PTCD2-201ENST00000308077 RASA3Q14644 834 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 SEPT2Q15019 361 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 KRT40Q6A162 431 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 SIAH1Q8IUQ4 282 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 TRIM22Q8IYM9 498 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 ZC3H4Q9UPT8 1303 aaKnown RBP8.07□□□□□ -1.12
PTCD2-201ENST00000308077 USP17L5A8MUK1 530 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 H7C1D1 291 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 CYTH3O43739 400 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 PRPF40AO75400 957 aaKnown RBP8.07□□□□□ -1.12
PTCD2-201ENST00000308077 GOLGA8HP0CJ92 632 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 PDHBP11177 359 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 PRKCSHP14314 528 aaPredicted RBP8.07□□□□□ -1.12
PTCD2-201ENST00000308077 KIF5BP33176 963 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 KIF23Q02241 960 aaPredicted RBP8.07□□□□□ -1.12
PTCD2-201ENST00000308077 MAP3K10Q02779 954 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 ABCB5Q2M3G0 1257 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 USP17L2Q6R6M4 530 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 MIGA2Q7L4E1 593 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 RGS22Q8NE09 1264 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 ZSCAN16Q9H4T2 348 aaPredicted RBP8.07□□□□□ -1.12
PTCD2-201ENST00000308077 ATP6V1DQ9Y5K8 247 aa8.07□□□□□ -1.12
PTCD2-201ENST00000308077 V9GY48 417 aaPredicted RBP8.07□□□□□ -1.12
PTCD2-201ENST00000308077 POLR2AP24928 1970 aaKnown RBP8.06□□□□□ -1.12
PTCD2-201ENST00000308077 GOLGA6L22H0YM25 854 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 TBC1D12O60347 775 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 GH2P01242 217 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 SNHG28P0DPA3 235 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 EEF2P13639 858 aaKnown RBP8.06□□□□□ -1.12
PTCD2-201ENST00000308077 TNNI2P48788 182 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 TNFAIP1Q13829 316 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 TMEM179Q6ZVK1 233 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 USP48Q86UV5 1035 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 TMEM87AQ8NBN3 555 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 WASF1Q92558 559 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 OTUD5Q96G74 571 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 CPVLQ9H3G5 476 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 NYAP2Q9P242 653 aa8.06□□□□□ -1.12
PTCD2-201ENST00000308077 FRMPD2Q68DX3 1309 aaPredicted RBP8.06□□□□□ -1.12
PTCD2-201ENST00000308077 FIBPO43427 364 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 TRAK2O60296 914 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 PARP1P09874 1014 aaKnown RBP8.05□□□□□ -1.12
PTCD2-201ENST00000308077 NCLP19338 710 aaKnown RBP8.05□□□□□ -1.12
PTCD2-201ENST00000308077 ATP2B2Q01814 1243 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 ICA1Q05084 483 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 ANGEL2Q5VTE6 544 aaKnown RBP8.05□□□□□ -1.12
PTCD2-201ENST00000308077 PIBF1Q8WXW3 757 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 MKL1Q969V6 931 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 DEFB129Q9H1M3 183 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 KANSL2Q9H9L4 492 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.05□□□□□ -1.12
PTCD2-201ENST00000308077 KCNJ14Q9UNX9 436 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 KLRF2D3W0D1 207 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 GADD45BO75293 160 aaPredicted RBP8.05□□□□□ -1.12
PTCD2-201ENST00000308077 MMP1P03956 469 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 AKAP17AQ02040 695 aaKnown RBP8.05□□□□□ -1.12
PTCD2-201ENST00000308077 ALYREFQ86V81 257 aaKnown RBP8.05□□□□□ -1.12
PTCD2-201ENST00000308077 FTOQ9C0B1 505 aaKnown RBP eCLIP8.05□□□□□ -1.12
PTCD2-201ENST00000308077 GGA3Q9NZ52 723 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 VPS54Q9P1Q0 977 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 TFIP11Q9UBB9 837 aaKnown RBP8.05□□□□□ -1.12
PTCD2-201ENST00000308077 TRIOBPQ9H2D6 2365 aa8.05□□□□□ -1.12
PTCD2-201ENST00000308077 TMEM265A0A087WTH1 108 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 A0A1W2PRG0 241 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 TMEM88BA6NKF7 163 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 PHF20L1A8MW92 1017 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 SCG2P13521 617 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 PTMSP20962 102 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 GNAQP50148 359 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 KRT85P78386 507 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 ZNF543Q08ER8 600 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 NPY5RQ15761 445 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 PFKFB3Q16875 520 aaPredicted RBP8.04□□□□□ -1.12
PTCD2-201ENST00000308077 DEFB115Q30KQ5 88 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 PPP4R3BQ5MIZ7 849 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 NBPF12Q5TAG4 269 aaPredicted RBP8.04□□□□□ -1.12
PTCD2-201ENST00000308077 GPR153Q6NV75 609 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 GPT2Q8TD30 523 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 SPZ1Q9BXG8 430 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 CABP5Q9NP86 173 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 ZBTB21Q9ULJ3 1066 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 DOCK1Q14185 1865 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 SSC5DA1L4H1 1573 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 PASKQ96RG2 1323 aa8.04□□□□□ -1.12
PTCD2-201ENST00000308077 U2AF2P26368 475 aaKnown RBP eCLIP8.04□□□□□ -1.12
PTCD2-201ENST00000308077 CAP2P40123 477 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms