RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 SEC63Q9UGP8 760 aaKnown RBP13.1□□□□□ -0.31
CUX1-202ENST00000292538 CDC42EP5Q6NZY7 148 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 PIGSQ96S52 555 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 KLRG2A4D1S0 409 aaPredicted RBP13.09□□□□□ -0.31
CUX1-202ENST00000292538 GRM4Q14833 912 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 CCDC96Q2M329 555 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 LETM2Q2VYF4 491 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 CFAP100Q494V2 611 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 JAKMIP3Q5VZ66 844 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 FANCLQ9NW38 375 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 TRMT1Q9NXH9 659 aaKnown RBP13.09□□□□□ -0.31
CUX1-202ENST00000292538 BIN2Q9UBW5 565 aaPredicted RBP13.09□□□□□ -0.31
CUX1-202ENST00000292538 NID2Q14112 1375 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 TAF1LQ8IZX4 1826 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 GNAQP50148 359 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 ZNF592Q92610 1267 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 COA7Q96BR5 231 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 C16orf45Q96MC5 204 aaPredicted RBP13.09□□□□□ -0.31
CUX1-202ENST00000292538 TRIM34Q9BYJ4 488 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 SERPINB13Q9UIV8 391 aa13.09□□□□□ -0.31
CUX1-202ENST00000292538 PP2D1A8MPX8 630 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 BMP6P22004 513 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 CRKP46108 304 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 DHX8Q14562 1220 aaKnown RBP13.08□□□□□ -0.32
CUX1-202ENST00000292538 SOGA3Q5TF21 947 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 KCTD1Q719H9 257 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 DEFB132Q7Z7B7 95 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 NEDD1Q8NHV4 660 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 TIGD1Q96MW7 591 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 MAN1B1Q9UKM7 699 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 MAPK8IP1Q9UQF2 711 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 SMCO2A6NFE2 343 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 SMTNL1A8MU46 457 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 ECE2O60344 883 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 FLAD1Q8NFF5 587 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 RRP36Q96EU6 259 aaKnown RBP13.08□□□□□ -0.32
CUX1-202ENST00000292538 PCDHA4Q9UN74 947 aa13.08□□□□□ -0.32
CUX1-202ENST00000292538 SBF2Q86WG5 1849 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 CALML3P27482 149 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 GOLGA8FQ08AF8 430 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 GOLGA8DPQ0D2H9 430 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 ARID3AQ99856 593 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 CCNT1O60563 726 aaKnown RBP13.07□□□□□ -0.32
CUX1-202ENST00000292538 TOP1P11387 765 aaKnown RBP13.07□□□□□ -0.32
CUX1-202ENST00000292538 UBASH3AP57075 661 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 TTBK2Q6IQ55 1244 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 APOBEC3HQ6NTF7 200 aaKnown RBP13.07□□□□□ -0.32
CUX1-202ENST00000292538 TMC4Q7Z404 712 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 SCAF8Q9UPN6 1271 aaKnown RBP13.07□□□□□ -0.32
CUX1-202ENST00000292538 LY75O60449 1722 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 COL24A1Q17RW2 1714 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 TIAM2Q8IVF5 1701 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 ZNF831Q5JPB2 1677 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 GAKO14976 1311 aa13.07□□□□□ -0.32
CUX1-202ENST00000292538 CHD4Q14839 1912 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 HLA-DOAP06340 250 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 RBM10P98175 930 aaKnown RBP13.06□□□□□ -0.32
CUX1-202ENST00000292538 FANCCQ00597 558 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 KARSQ15046 597 aaKnown RBP13.06□□□□□ -0.32
CUX1-202ENST00000292538 CCDC178Q5BJE1 867 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 KIAA1524Q8TCG1 905 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 STK32BQ9NY57 414 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 PCDHA6Q9UN73 950 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 PCDHA8Q9Y5H6 950 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 PPIP5K2O43314 1243 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 RAD17O75943 681 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 GDF11O95390 407 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 SKILP12757 684 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 MYL5Q02045 173 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 IKQ13123 557 aaPredicted RBP13.06□□□□□ -0.32
CUX1-202ENST00000292538 IL17AQ16552 155 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 POTEAQ6S8J7 498 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 TSC1Q92574 1164 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 DPF2Q92785 391 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 TNFRSF25Q93038 417 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 FAM163AQ96GL9 167 aaPredicted RBP13.06□□□□□ -0.32
CUX1-202ENST00000292538 TDRD3Q9H7E2 651 aaKnown RBP13.06□□□□□ -0.32
CUX1-202ENST00000292538 TMEM260Q9NX78 707 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 MTMR4Q9NYA4 1195 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 TUBE1Q9UJT0 475 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 PALM3A6NDB9 673 aaPredicted RBP13.06□□□□□ -0.32
CUX1-202ENST00000292538 STXBP3O00186 592 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 ACTN4O43707 911 aaKnown RBP13.06□□□□□ -0.32
CUX1-202ENST00000292538 TPM3P06753 285 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 SNAP25P60880 206 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 FMR1Q06787 632 aaKnown RBP eCLIP13.06□□□□□ -0.324e-6■■■■□ 21.6
CUX1-202ENST00000292538 NCAPHQ15003 741 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 SLC15A2Q16348 729 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 TPD52L1Q16890 204 aaPredicted RBP13.06□□□□□ -0.32
CUX1-202ENST00000292538 TMEM60Q9H2L4 133 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 BARHL2Q9NY43 387 aa13.06□□□□□ -0.32
CUX1-202ENST00000292538 UQCRHLA0A096LP55 91 aa13.05□□□□□ -0.32
CUX1-202ENST00000292538 UQCRHP07919 91 aa13.05□□□□□ -0.32
CUX1-202ENST00000292538 MDM2Q00987 491 aaPredicted RBP13.05□□□□□ -0.32
CUX1-202ENST00000292538 LRRC8AQ8IWT6 810 aa13.05□□□□□ -0.32
CUX1-202ENST00000292538 PAGE5Q96GU1 130 aa13.05□□□□□ -0.32
CUX1-202ENST00000292538 OSBPL5Q9H0X9 879 aaPredicted RBP13.05□□□□□ -0.32
CUX1-202ENST00000292538 NFE2L3Q9Y4A8 694 aa13.05□□□□□ -0.32
CUX1-202ENST00000292538 CLRN2A0PK11 232 aa13.05□□□□□ -0.32
CUX1-202ENST00000292538 TMED8Q6PL24 325 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms