RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 CNNM2Q9H8M5 875 aa15.75■□□□□ 0.11
VPS28-201ENST00000292510 HOXC10Q9NYD6 342 aa15.75■□□□□ 0.11
VPS28-201ENST00000292510 ISY1Q9ULR0 285 aaKnown RBP15.75■□□□□ 0.11
VPS28-201ENST00000292510 SYNPO2Q9UMS6 1093 aa15.75■□□□□ 0.11
VPS28-201ENST00000292510 PTPN22Q9Y2R2 807 aa15.75■□□□□ 0.11
VPS28-201ENST00000292510 RABGAP1Q9Y3P9 1069 aa15.75■□□□□ 0.11
VPS28-201ENST00000292510 TNPO2O14787 897 aaKnown RBP15.74■□□□□ 0.11
VPS28-201ENST00000292510 TOP1P11387 765 aaKnown RBP15.74■□□□□ 0.11
VPS28-201ENST00000292510 ARHGEF6Q15052 776 aa15.74■□□□□ 0.11
VPS28-201ENST00000292510 NECTIN1Q15223 517 aa15.74■□□□□ 0.11
VPS28-201ENST00000292510 PKN2Q16513 984 aaKnown RBP15.74■□□□□ 0.11
VPS28-201ENST00000292510 CREB3L3Q68CJ9 461 aa15.74■□□□□ 0.11
VPS28-201ENST00000292510 FBXO46Q6PJ61 603 aaPredicted RBP15.74■□□□□ 0.11
VPS28-201ENST00000292510 GTF3C2Q8WUA4 911 aaPredicted RBP15.74■□□□□ 0.11
VPS28-201ENST00000292510 ABHD8Q96I13 439 aa15.74■□□□□ 0.11
VPS28-201ENST00000292510 ZSCAN10Q96SZ4 725 aaPredicted RBP15.74■□□□□ 0.11
VPS28-201ENST00000292510 PPP1R9AQ9ULJ8 1098 aa15.74■□□□□ 0.11
VPS28-201ENST00000292510 PTCH2Q9Y6C5 1203 aa15.74■□□□□ 0.11
VPS28-201ENST00000292510 TNKSO95271 1327 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 BMP3P12645 472 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 SLC1A4P43007 532 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 PRKCZQ05513 592 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 TRDNQ13061 729 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 COL9A3Q14050 684 aaPredicted RBP15.73■□□□□ 0.11
VPS28-201ENST00000292510 KCTD1Q719H9 257 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 IQCA1Q86XH1 822 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 GMCL1Q96IK5 515 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 SLF1Q9BQI6 1058 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 SRRDQ9UH36 339 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 GABRQQ9UN88 632 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 HPS5Q9UPZ3 1129 aa15.73■□□□□ 0.11
VPS28-201ENST00000292510 MYPNQ86TC9 1320 aa15.72■□□□□ 0.11
VPS28-201ENST00000292510 TMEM232C9JQI7 657 aa15.72■□□□□ 0.11
VPS28-201ENST00000292510 NT5C2P49902 561 aa15.72■□□□□ 0.11
VPS28-201ENST00000292510 CHST3Q7LGC8 479 aa15.72■□□□□ 0.11
VPS28-201ENST00000292510 RALYLQ86SE5 291 aaKnown RBP15.72■□□□□ 0.11
VPS28-201ENST00000292510 ENAHQ8N8S7 591 aaPredicted RBP15.72■□□□□ 0.11
VPS28-201ENST00000292510 NCOA7Q8NI08 942 aa15.72■□□□□ 0.11
VPS28-201ENST00000292510 KIFC2Q96AC6 838 aa15.72■□□□□ 0.11
VPS28-201ENST00000292510 TTC14Q96N46 770 aa15.72■□□□□ 0.11
VPS28-201ENST00000292510 MGAMO43451 1857 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 A0A0G2JMZ2 1700 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 PARP14Q460N5 1801 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 VWA5AO00534 786 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 GNRH1P01148 92 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 HOXD10P28358 340 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 PLS1Q14651 629 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 TMEM132BQ14DG7 1078 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 CCDC96Q2M329 555 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 CCDC178Q5BJE1 867 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 WDR78Q5VTH9 848 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 DGKHQ86XP1 1220 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 MB21D2Q8IYB1 491 aaPredicted RBP15.71■□□□□ 0.11
VPS28-201ENST00000292510 UBAC1Q9BSL1 405 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 MOV10L1Q9BXT6 1211 aaKnown RBP15.71■□□□□ 0.11
VPS28-201ENST00000292510 SPATC1LQ9H0A9 340 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 FEM1BQ9UK73 627 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 ADAMTS5Q9UNA0 930 aa15.71■□□□□ 0.11
VPS28-201ENST00000292510 FRMPD2Q68DX3 1309 aaPredicted RBP15.7■□□□□ 0.1
VPS28-201ENST00000292510 PDHBP11177 359 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 FLT3LGP49771 235 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 ANTXR2P58335 489 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 IKQ13123 557 aaPredicted RBP15.7■□□□□ 0.1
VPS28-201ENST00000292510 TTBK2Q6IQ55 1244 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 GPR142Q7Z601 462 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 CCAR1Q8IX12 1150 aaKnown RBP15.7■□□□□ 0.1
VPS28-201ENST00000292510 RASEFQ8IZ41 740 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 MB21D1Q8N884 522 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 PRPF38AQ8NAV1 312 aaKnown RBP15.7■□□□□ 0.1
VPS28-201ENST00000292510 PNMA1Q8ND90 353 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 REPS2Q8NFH8 660 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 DCAF4Q8WV16 495 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 ANKS1AQ92625 1134 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 COA7Q96BR5 231 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 KAT14Q9H8E8 782 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 SENP2Q9HC62 589 aa15.7■□□□□ 0.1
VPS28-201ENST00000292510 IFIT3O14879 490 aaKnown RBP15.69■□□□□ 0.1
VPS28-201ENST00000292510 CAPN15O75808 1086 aa15.69■□□□□ 0.1
VPS28-201ENST00000292510 MAPK4P31152 587 aa15.69■□□□□ 0.1
VPS28-201ENST00000292510 STAT2P52630 851 aa15.69■□□□□ 0.1
VPS28-201ENST00000292510 CCNA1P78396 465 aa15.69■□□□□ 0.1
VPS28-201ENST00000292510 SEC23AQ15436 765 aa15.69■□□□□ 0.1
VPS28-201ENST00000292510 IFIT1BQ5T764 474 aaKnown RBP15.69■□□□□ 0.1
VPS28-201ENST00000292510 PLEKHH3Q7Z736 793 aa15.69■□□□□ 0.1
VPS28-201ENST00000292510 RAET1EQ8TD07 263 aa15.69■□□□□ 0.1
VPS28-201ENST00000292510 CWC22Q9HCG8 908 aaKnown RBP15.69■□□□□ 0.1
VPS28-201ENST00000292510 GPCPD1Q9NPB8 672 aa15.69■□□□□ 0.1
VPS28-201ENST00000292510 GJD2Q9UKL4 321 aa15.69■□□□□ 0.1
VPS28-201ENST00000292510 DOCK3Q8IZD9 2030 aa15.68■□□□□ 0.1
VPS28-201ENST00000292510 GOLGA8HP0CJ92 632 aa15.68■□□□□ 0.1
VPS28-201ENST00000292510 SNHG28P0DPA3 235 aa15.68■□□□□ 0.1
VPS28-201ENST00000292510 ERCC3P19447 782 aa15.68■□□□□ 0.1
VPS28-201ENST00000292510 SLC16A2P36021 539 aa15.68■□□□□ 0.1
VPS28-201ENST00000292510 PRMT2P55345 433 aa15.68■□□□□ 0.1
VPS28-201ENST00000292510 SNAP25P60880 206 aa15.68■□□□□ 0.1
VPS28-201ENST00000292510 RNF20Q5VTR2 975 aa15.68■□□□□ 0.1
VPS28-201ENST00000292510 NCAPG2Q86XI2 1143 aa15.68■□□□□ 0.1
VPS28-201ENST00000292510 SH3TC2Q8TF17 1288 aa15.68■□□□□ 0.1
VPS28-201ENST00000292510 GPHNQ9NQX3 736 aaPredicted RBP15.68■□□□□ 0.1
VPS28-201ENST00000292510 ZNF214Q9UL59 606 aaPredicted RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms