RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 ACBD3Q9H3P7 528 aa11.72□□□□□ -0.53
SKA1-201ENST00000285116 MRPL44Q9H9J2 332 aaKnown RBP11.72□□□□□ -0.53
SKA1-201ENST00000285116 INCENPQ9NQS7 918 aa11.72□□□□□ -0.53
SKA1-201ENST00000285116 SEC31BQ9NQW1 1179 aa11.72□□□□□ -0.53
SKA1-201ENST00000285116 CORO7P57737 925 aa11.72□□□□□ -0.53
SKA1-201ENST00000285116 ATP2C1P98194 919 aaPredicted RBP11.72□□□□□ -0.53
SKA1-201ENST00000285116 KARSQ15046 597 aaKnown RBP11.72□□□□□ -0.53
SKA1-201ENST00000285116 FILIP1LQ4L180 1135 aa11.72□□□□□ -0.53
SKA1-201ENST00000285116 PPFIBP1Q86W92 1011 aa11.72□□□□□ -0.53
SKA1-201ENST00000285116 OXER1Q8TDS5 423 aa11.72□□□□□ -0.53
SKA1-201ENST00000285116 BRIP1Q9BX63 1249 aa11.72□□□□□ -0.53
SKA1-201ENST00000285116 ZSWIM4Q9H7M6 989 aa11.72□□□□□ -0.53
SKA1-201ENST00000285116 MYH8P13535 1937 aa11.71□□□□□ -0.53
SKA1-201ENST00000285116 A0A087X0B3 334 aa11.71□□□□□ -0.53
SKA1-201ENST00000285116 E2F4Q16254 413 aa11.71□□□□□ -0.53
SKA1-201ENST00000285116 SPECC1Q5M775 1068 aa11.71□□□□□ -0.53
SKA1-201ENST00000285116 TMTC1Q8IUR5 882 aa11.71□□□□□ -0.53
SKA1-201ENST00000285116 IGSF22Q8N9C0 903 aa11.71□□□□□ -0.53
SKA1-201ENST00000285116 UBAC1Q9BSL1 405 aa11.71□□□□□ -0.53
SKA1-201ENST00000285116 ABCB6Q9NP58 842 aa11.71□□□□□ -0.53
SKA1-201ENST00000285116 COL5A3P25940 1745 aaPredicted RBP11.71□□□□□ -0.53
SKA1-201ENST00000285116 PDS5AQ29RF7 1337 aaKnown RBP11.71□□□□□ -0.53
SKA1-201ENST00000285116 KIF5CO60282 957 aa11.71□□□□□ -0.54
SKA1-201ENST00000285116 CD44P16070 742 aaKnown RBP11.71□□□□□ -0.54
SKA1-201ENST00000285116 NPY5RQ15761 445 aa11.71□□□□□ -0.54
SKA1-201ENST00000285116 PTPN21Q16825 1174 aa11.71□□□□□ -0.54
SKA1-201ENST00000285116 PARP10Q53GL7 1025 aa11.71□□□□□ -0.54
SKA1-201ENST00000285116 RAD9BQ6WBX8 426 aa11.71□□□□□ -0.54
SKA1-201ENST00000285116 ZNF662Q6ZS27 426 aa11.71□□□□□ -0.54
SKA1-201ENST00000285116 TRMT44Q8IYL2 757 aaKnown RBP11.71□□□□□ -0.54
SKA1-201ENST00000285116 PNKPQ96T60 521 aa11.71□□□□□ -0.54
SKA1-201ENST00000285116 DESI2Q9BSY9 194 aa11.71□□□□□ -0.54
SKA1-201ENST00000285116 CABP5Q9NP86 173 aa11.71□□□□□ -0.54
SKA1-201ENST00000285116 MED4Q9NPJ6 270 aa11.71□□□□□ -0.54
SKA1-201ENST00000285116 PUF60Q9UHX1 559 aaKnown RBP11.71□□□□□ -0.54
SKA1-201ENST00000285116 RWDD2AQ9UIY3 292 aa11.71□□□□□ -0.54
SKA1-201ENST00000285116 RBL2Q08999 1139 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 FOXR1Q6PIV2 292 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 PAXIP1Q6ZW49 1069 aaPredicted RBP11.7□□□□□ -0.54
SKA1-201ENST00000285116 DZIP3Q86Y13 1208 aaKnown RBP11.7□□□□□ -0.54
SKA1-201ENST00000285116 ZBTB9Q96C00 473 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 ZBTB1Q9Y2K1 713 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 LTBP4Q8N2S1 1624 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 TNKSO95271 1327 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 PRKAB2O43741 272 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 N4BP1O75113 896 aaKnown RBP11.7□□□□□ -0.54
SKA1-201ENST00000285116 EIF5P55010 431 aaKnown RBP11.7□□□□□ -0.54
SKA1-201ENST00000285116 CASP8Q14790 479 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 ZNF827Q17R98 1081 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 WHAMMP3Q1A5X7 153 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 LRRC31Q6UY01 552 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 USP49Q70CQ1 688 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 GRAMD1CQ8IYS0 662 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 SYMPKQ92797 1274 aaKnown RBP11.7□□□□□ -0.54
SKA1-201ENST00000285116 ZSCAN10Q96SZ4 725 aaPredicted RBP11.7□□□□□ -0.54
SKA1-201ENST00000285116 CDC5LQ99459 802 aaKnown RBP11.7□□□□□ -0.54
SKA1-201ENST00000285116 BAZ2AQ9UIF9 1905 aaKnown RBP11.7□□□□□ -0.54
SKA1-201ENST00000285116 SOWAHDA6NJG2 315 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 TEX33O43247 280 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 CPP00450 1065 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 AKAP17AQ02040 695 aaKnown RBP11.7□□□□□ -0.54
SKA1-201ENST00000285116 CCDC152Q4G0S7 254 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 PDXDC2PQ6P474 469 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 EFCAB13Q8IY85 973 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 ENAHQ8N8S7 591 aaPredicted RBP11.7□□□□□ -0.54
SKA1-201ENST00000285116 CCDC102AQ96A19 550 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 NCAPGQ9BPX3 1015 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 DEF6Q9H4E7 631 aa11.7□□□□□ -0.54
SKA1-201ENST00000285116 GTPBP6O43824 516 aaPredicted RBP11.69□□□□□ -0.54
SKA1-201ENST00000285116 TRIM37O94972 964 aa11.69□□□□□ -0.54
SKA1-201ENST00000285116 GYPCP04921 128 aa11.69□□□□□ -0.54
SKA1-201ENST00000285116 ATP2B1P20020 1258 aa11.69□□□□□ -0.54
SKA1-201ENST00000285116 ARL6IP4Q66PJ3 421 aaKnown RBP11.69□□□□□ -0.54
SKA1-201ENST00000285116 TMTC3Q6ZXV5 915 aa11.69□□□□□ -0.54
SKA1-201ENST00000285116 SLC51AQ86UW1 340 aa11.69□□□□□ -0.54
SKA1-201ENST00000285116 MYCBPQ99417 103 aaPredicted RBP11.69□□□□□ -0.54
SKA1-201ENST00000285116 RIOK1Q9BRS2 568 aaKnown RBP11.69□□□□□ -0.54
SKA1-201ENST00000285116 RMND1Q9NWS8 449 aa11.69□□□□□ -0.54
SKA1-201ENST00000285116 MYH1P12882 1939 aa11.69□□□□□ -0.54
SKA1-201ENST00000285116 ORC4O43929 436 aa11.69□□□□□ -0.54
SKA1-201ENST00000285116 PPFIA4O75335 1185 aa11.69□□□□□ -0.54
SKA1-201ENST00000285116 TROAPQ12815 778 aa11.69□□□□□ -0.54
SKA1-201ENST00000285116 CATIPQ7Z7H3 387 aa11.69□□□□□ -0.54
SKA1-201ENST00000285116 SUGP1Q8IWZ8 645 aaKnown RBP11.69□□□□□ -0.54
SKA1-201ENST00000285116 IRX2Q9BZI1 471 aaPredicted RBP11.69□□□□□ -0.54
SKA1-201ENST00000285116 CCDC88AQ3V6T2 1871 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 CTAGE9A4FU28 777 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 RGL2O15211 777 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 MYL1P05976 194 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 KIF4BQ2VIQ3 1234 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 EPSTI1Q96J88 318 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 FAM107BQ9H098 131 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 LZTFL1Q9NQ48 299 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 XDHP47989 1333 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 CNTNAP5Q8WYK1 1306 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 COL1A1P02452 1464 aaPredicted RBP11.68□□□□□ -0.54
SKA1-201ENST00000285116 MAGEB6P1A0A0J9YX57 407 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 MTF1Q14872 753 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 TTC38Q5R3I4 469 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 CYP26C1Q6V0L0 522 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms