RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 CLIC6Q96NY7 704 aa17.52■□□□□ 0.39
SF3B4-201ENST00000271628 BARHL2Q9NY43 387 aa17.52■□□□□ 0.39
SF3B4-201ENST00000271628 FBXO2Q9UK22 296 aaPredicted RBP17.52■□□□□ 0.39
SF3B4-201ENST00000271628 PCDHA4Q9UN74 947 aa17.52■□□□□ 0.39
SF3B4-201ENST00000271628 ATP2B1P20020 1258 aa17.51■□□□□ 0.39
SF3B4-201ENST00000271628 ASPRV1Q53RT3 343 aa17.51■□□□□ 0.39
SF3B4-201ENST00000271628 ELOA2Q8IYF1 753 aaPredicted RBP17.51■□□□□ 0.39
SF3B4-201ENST00000271628 LARGE2Q8N3Y3 721 aa17.51■□□□□ 0.39
SF3B4-201ENST00000271628 ENTPD3O75355 529 aa17.51■□□□□ 0.39
SF3B4-201ENST00000271628 GOLGA8HP0CJ92 632 aa17.51■□□□□ 0.39
SF3B4-201ENST00000271628 USP17L2Q6R6M4 530 aa17.51■□□□□ 0.39
SF3B4-201ENST00000271628 RRP36Q96EU6 259 aaKnown RBP17.51■□□□□ 0.39
SF3B4-201ENST00000271628 DNAJC25Q9H1X3 360 aa17.51■□□□□ 0.39
SF3B4-201ENST00000271628 CBX8Q9HC52 389 aa17.51■□□□□ 0.39
SF3B4-201ENST00000271628 FAM198AQ9UFP1 575 aa17.51■□□□□ 0.39
SF3B4-201ENST00000271628 SEC63Q9UGP8 760 aaKnown RBP17.51■□□□□ 0.39
SF3B4-201ENST00000271628 KCNH3Q9ULD8 1083 aa17.51■□□□□ 0.39
SF3B4-201ENST00000271628 DYNC1I1O14576 645 aa17.5■□□□□ 0.39
SF3B4-201ENST00000271628 PDHBP11177 359 aa17.5■□□□□ 0.39
SF3B4-201ENST00000271628 VEGFAP15692 232 aaPredicted RBP17.5■□□□□ 0.39
SF3B4-201ENST00000271628 CFAP100Q494V2 611 aa17.5■□□□□ 0.39
SF3B4-201ENST00000271628 EARS2Q5JPH6 523 aaKnown RBP17.5■□□□□ 0.39
SF3B4-201ENST00000271628 RSBN1LQ6PCB5 846 aaPredicted RBP17.5■□□□□ 0.39
SF3B4-201ENST00000271628 DAGLBQ8NCG7 672 aa17.5■□□□□ 0.39
SF3B4-201ENST00000271628 FERMT2Q96AC1 680 aa17.5■□□□□ 0.39
SF3B4-201ENST00000271628 TRIM34Q9BYJ4 488 aa17.5■□□□□ 0.39
SF3B4-201ENST00000271628 NAT10Q9H0A0 1025 aaKnown RBP17.5■□□□□ 0.39
SF3B4-201ENST00000271628 PIM2Q9P1W9 311 aa17.5■□□□□ 0.39
SF3B4-201ENST00000271628 CLIP2Q9UDT6 1046 aa17.5■□□□□ 0.39
SF3B4-201ENST00000271628 HDAC9Q9UKV0 1011 aa17.5■□□□□ 0.39
SF3B4-201ENST00000271628 UQCRHLA0A096LP55 91 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 UQCRHP07919 91 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 VIL1P09327 827 aaKnown RBP17.49■□□□□ 0.39
SF3B4-201ENST00000271628 SNHG28P0DPA3 235 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 POLD1P28340 1107 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 TCP10Q12799 353 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 TTC38Q5R3I4 469 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 ZSCAN29Q8IWY8 852 aaPredicted RBP17.49■□□□□ 0.39
SF3B4-201ENST00000271628 ZFPM1Q8IX07 1006 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 HOOK1Q9UJC3 728 aaKnown RBP17.49■□□□□ 0.39
SF3B4-201ENST00000271628 PCDHAC2Q9Y5I4 1007 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 GOLGB1Q14789 3259 aaKnown RBP17.49■□□□□ 0.39
SF3B4-201ENST00000271628 hCG_1984214I3L0E3 225 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 MPHOSPH10O00566 681 aaKnown RBP17.49■□□□□ 0.39
SF3B4-201ENST00000271628 CACNB3P54284 484 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 WWC2Q6AWC2 1192 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 PIK3AP1Q6ZUJ8 805 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 HEATR3Q7Z4Q2 680 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 LUZP1Q86V48 1076 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 OGFOD1Q8N543 542 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 ZNF713Q8N859 430 aaPredicted RBP17.49■□□□□ 0.39
SF3B4-201ENST00000271628 GPKOWQ92917 476 aaPredicted RBP eCLIP17.49■□□□□ 0.39
SF3B4-201ENST00000271628 MAP7D2Q96T17 732 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 RIOX1Q9H6W3 641 aa17.49■□□□□ 0.39
SF3B4-201ENST00000271628 FAM205CA6NFA0 338 aa17.48■□□□□ 0.39
SF3B4-201ENST00000271628 DDTLA6NHG4 134 aaPredicted RBP17.48■□□□□ 0.39
SF3B4-201ENST00000271628 USP17L5A8MUK1 530 aa17.48■□□□□ 0.39
SF3B4-201ENST00000271628 GOLGA6L6A8MZA4 724 aa17.48■□□□□ 0.39
SF3B4-201ENST00000271628 STXBP3O00186 592 aa17.48■□□□□ 0.39
SF3B4-201ENST00000271628 NOLC1Q14978 699 aaKnown RBP eCLIP17.48■□□□□ 0.39
SF3B4-201ENST00000271628 SLC35G1Q2M3R5 365 aa17.48■□□□□ 0.39
SF3B4-201ENST00000271628 CERKLQ49MI3 558 aaPredicted RBP17.48■□□□□ 0.39
SF3B4-201ENST00000271628 TDRD3Q9H7E2 651 aaKnown RBP17.48■□□□□ 0.39
SF3B4-201ENST00000271628 GNA11P29992 359 aa17.48■□□□□ 0.39
SF3B4-201ENST00000271628 TATDN1Q6P1N9 297 aa17.48■□□□□ 0.39
SF3B4-201ENST00000271628 METTL16Q86W50 562 aaKnown RBP17.48■□□□□ 0.39
SF3B4-201ENST00000271628 CEP57L1Q8IYX8 460 aa17.48■□□□□ 0.39
SF3B4-201ENST00000271628 CNNM3Q8NE01 707 aa17.48■□□□□ 0.39
SF3B4-201ENST00000271628 PRMT6Q96LA8 375 aaPredicted RBP17.48■□□□□ 0.39
SF3B4-201ENST00000271628 ZMYND12Q9H0C1 365 aa17.48■□□□□ 0.39
SF3B4-201ENST00000271628 ZNF277Q9NRM2 450 aaPredicted RBP17.48■□□□□ 0.39
SF3B4-201ENST00000271628 TMOD2Q9NZR1 351 aa17.48■□□□□ 0.39
SF3B4-201ENST00000271628 COL2A1P02458 1487 aaPredicted RBP17.47■□□□□ 0.39
SF3B4-201ENST00000271628 GREB1LQ9C091 1923 aaPredicted RBP17.47■□□□□ 0.39
SF3B4-201ENST00000271628 ATRNL1Q5VV63 1379 aa17.47■□□□□ 0.39
SF3B4-201ENST00000271628 GOLGA6L19H0YKK7 550 aa17.47■□□□□ 0.39
SF3B4-201ENST00000271628 M0R2N6 131 aa17.47■□□□□ 0.39
SF3B4-201ENST00000271628 PLCB2Q00722 1185 aa17.47■□□□□ 0.39
SF3B4-201ENST00000271628 GPATCH4Q5T3I0 446 aaKnown RBP17.47■□□□□ 0.39
SF3B4-201ENST00000271628 KRBA2Q6ZNG9 492 aa17.47■□□□□ 0.39
SF3B4-201ENST00000271628 CCDC34Q96HJ3 373 aa17.47■□□□□ 0.39
SF3B4-201ENST00000271628 MTFR1LQ9H019 292 aa17.47■□□□□ 0.39
SF3B4-201ENST00000271628 TTC12Q9H892 705 aaPredicted RBP17.47■□□□□ 0.39
SF3B4-201ENST00000271628 SPTLC3Q9NUV7 552 aa17.47■□□□□ 0.39
SF3B4-201ENST00000271628 CCDC194A0A1B0GVG4 234 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 NAPAP54920 295 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 EIF6P56537 245 aaKnown RBP17.46■□□□□ 0.39
SF3B4-201ENST00000271628 ATP2C1P98194 919 aaPredicted RBP17.46■□□□□ 0.39
SF3B4-201ENST00000271628 TYW1BQ6NUM6 668 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 KANK3Q6NY19 840 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 LRRC47Q8N1G4 583 aaKnown RBP17.46■□□□□ 0.39
SF3B4-201ENST00000271628 MKL1Q969V6 931 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 PRIMPOLQ96LW4 560 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 DNAJC18Q9H819 358 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 KANSL2Q9H9L4 492 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 C6orf50Q9HD87 102 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 ZNRF3Q9ULT6 936 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 BECN2A8MW95 431 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 PSMD14O00487 310 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 RAD17O75943 681 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms