RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 KLRC3Q07444 240 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 FUT2Q10981 343 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 PKP1Q13835 747 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 SLFN13Q68D06 897 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 TTBK2Q6IQ55 1244 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 TMTC3Q6ZXV5 915 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 SMARCC2Q8TAQ2 1214 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 AIFM3Q96NN9 605 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 SLC26A6Q9BXS9 759 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 UBA5Q9GZZ9 404 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 ELP3Q9H9T3 547 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 ARHGEF10LQ9HCE6 1279 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 PICK1Q9NRD5 415 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 ISY1Q9ULR0 285 aaKnown RBP11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 TMX2Q9Y320 296 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 SNCAIPQ9Y6H5 919 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 ZHX2Q9Y6X8 837 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 PALM3A6NDB9 673 aaPredicted RBP11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 TRIM75PA6NK02 468 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 KLRF2D3W0D1 207 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 KIF3CO14782 793 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 DHX16O60231 1041 aaKnown RBP11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 CELF2O95319 508 aaKnown RBP11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 NDUFB10O96000 172 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 SLC16A2P36021 539 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 RCAN1P53805 252 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 SPP2Q13103 211 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 CCDC96Q2M329 555 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 PPP4R3BQ5MIZ7 849 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 NOL9Q5SY16 702 aaKnown RBP11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 FOXD4L5Q5VV16 416 aaPredicted RBP11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 FOXD4L4Q8WXT5 416 aaPredicted RBP11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 LLPHQ9BRT6 129 aaKnown RBP11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 VAT1LQ9HCJ6 419 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 GJB4Q9NTQ9 266 aa11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 ORC3Q9UBD5 711 aaPredicted RBP11.33□□□□□ -0.6
SNRNP40-201ENST00000263694 CYTH3O43739 400 aa11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 SNHG28P0DPA3 235 aa11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 IFNAR1P17181 557 aa11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 KIF5BP33176 963 aa11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 SSRP1Q08945 709 aaKnown RBP11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 ZNF543Q08ER8 600 aa11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 MTMR2Q13614 643 aa11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 CST9Q5W186 159 aa11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 OTUD7BQ6GQQ9 843 aa11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 FEZ1Q99689 392 aa11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 RBM28Q9NW13 759 aaKnown RBP11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 CSADQ9Y600 493 aa11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 V9GY48 417 aaPredicted RBP11.32□□□□□ -0.6
SNRNP40-201ENST00000263694 CNTNAP5Q8WYK1 1306 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 CCDC196A0A1B0GTZ2 297 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 SLC1A4P43007 532 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 MAP3K11Q16584 847 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 FAM83BQ5T0W9 1011 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 ARMC9Q7Z3E5 817 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 ANKRD13AQ8IZ07 590 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 ZNF280CQ8ND82 737 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 GMCL1P1Q8NEA9 526 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 MAP3K14Q99558 947 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 VCPKMTQ9H867 229 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 CWC22Q9HCG8 908 aaKnown RBP11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 GOPCQ9HD26 462 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 GINM1Q9NU53 330 aa11.31□□□□□ -0.6
SNRNP40-201ENST00000263694 TRPM7Q96QT4 1865 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 TMEM232C9JQI7 657 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 FMNL1O95466 1100 aaPredicted RBP11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 SYT1P21579 422 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 HMGCS2P54868 508 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 SNAP25P60880 206 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 GUCY1B3Q02153 619 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 ASPRV1Q53RT3 343 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 LDLRAD1Q5T700 205 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 LARP1BQ659C4 914 aaKnown RBP11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 CPLX2Q6PUV4 134 aaKnown RBP11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 FAM184AQ8NB25 1140 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 DCAF4Q8WV16 495 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 OTUD5Q96G74 571 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 WDR18Q9BV38 432 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 GBA2Q9HCG7 927 aaPredicted RBP11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 EMILIN3Q9NT22 766 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 ZDHHC9Q9Y397 364 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 AFG3L2Q9Y4W6 797 aa11.3□□□□□ -0.6
SNRNP40-201ENST00000263694 USP17L10C9JJH3 530 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 CDKL5O76039 1030 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 BMP3P12645 472 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 YY1P25490 414 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 BACE1P56817 501 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 HMGN5P82970 282 aaKnown RBP11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 PPP2R5BQ15173 497 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 PKN1Q16512 942 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 HOMER1Q86YM7 354 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 ADGRF4Q8IZF3 695 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 SHISA4Q96DD7 197 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 ALG1Q9BT22 464 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 KIAA1683Q9H0B3 1180 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 PTPRFP10586 1907 aa11.29□□□□□ -0.6
SNRNP40-201ENST00000263694 VPS37CA5D8V6 355 aaPredicted RBP11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 IRF6O14896 467 aa11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 PRPF3O43395 683 aaKnown RBP11.28□□□□□ -0.6
SNRNP40-201ENST00000263694 GJA5P36382 358 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms