RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 NID2Q14112 1375 aa31.98■■■□□ 2.71
SMARCD3-201ENST00000262188 NTRK3Q16288 839 aa31.98■■■□□ 2.71
SMARCD3-201ENST00000262188 NSUN7Q8NE18 718 aaKnown RBP31.98■■■□□ 2.71
SMARCD3-201ENST00000262188 VCPKMTQ9H867 229 aa31.98■■■□□ 2.71
SMARCD3-201ENST00000262188 USP17L10C9JJH3 530 aa31.97■■■□□ 2.71
SMARCD3-201ENST00000262188 PARP1P09874 1014 aaKnown RBP31.97■■■□□ 2.71
SMARCD3-201ENST00000262188 SNHG28P0DPA3 235 aa31.97■■■□□ 2.71
SMARCD3-201ENST00000262188 GJA5P36382 358 aa31.97■■■□□ 2.71
SMARCD3-201ENST00000262188 SRBD1Q8N5C6 995 aaKnown RBP31.97■■■□□ 2.71
SMARCD3-201ENST00000262188 GMCL1P1Q8NEA9 526 aa31.97■■■□□ 2.71
SMARCD3-201ENST00000262188 PIBF1Q8WXW3 757 aa31.97■■■□□ 2.71
SMARCD3-201ENST00000262188 OPTNQ96CV9 577 aa31.97■■■□□ 2.71
SMARCD3-201ENST00000262188 NAP1L5Q96NT1 182 aaPredicted RBP31.97■■■□□ 2.71
SMARCD3-201ENST00000262188 WDR18Q9BV38 432 aa31.97■■■□□ 2.71
SMARCD3-201ENST00000262188 UBA5Q9GZZ9 404 aa31.97■■■□□ 2.71
SMARCD3-201ENST00000262188 BAZ2BQ9UIF8 2168 aaKnown RBP31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 hCG_1642624A0A1W2PR95 340 aa31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 CPLX1O14810 134 aa31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 MKRN3Q13064 507 aaKnown RBP31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 RBM46Q8TBY0 533 aaKnown RBP31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 AS3MTQ9HBK9 375 aa31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 EMILIN3Q9NT22 766 aa31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 PALM3A6NDB9 673 aaPredicted RBP31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 IRF6O14896 467 aa31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 SLC1A4P43007 532 aa31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 RCAN1P53805 252 aa31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 HMGCS2P54868 508 aa31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 GOPCQ9HD26 462 aa31.96■■■□□ 2.71
SMARCD3-201ENST00000262188 PTPDC1A2A3K4 754 aa31.95■■■□□ 2.71
SMARCD3-201ENST00000262188 SLC16A2P36021 539 aa31.95■■■□□ 2.71
SMARCD3-201ENST00000262188 BACE1P56817 501 aa31.95■■■□□ 2.71
SMARCD3-201ENST00000262188 ZNF543Q08ER8 600 aa31.95■■■□□ 2.71
SMARCD3-201ENST00000262188 TMTC3Q6ZXV5 915 aa31.95■■■□□ 2.71
SMARCD3-201ENST00000262188 SLC10A4Q96EP9 437 aa31.95■■■□□ 2.71
SMARCD3-201ENST00000262188 KIAA1683Q9H0B3 1180 aa31.95■■■□□ 2.71
SMARCD3-201ENST00000262188 SPDYE5A6NIY4 337 aa31.94■■■□□ 2.7
SMARCD3-201ENST00000262188 FKBP1BP68106 108 aa31.94■■■□□ 2.7
SMARCD3-201ENST00000262188 FAM83BQ5T0W9 1011 aa31.94■■■□□ 2.7
SMARCD3-201ENST00000262188 ERO1BQ86YB8 467 aa31.94■■■□□ 2.7
SMARCD3-201ENST00000262188 KLRF2D3W0D1 207 aa31.94■■■□□ 2.7
SMARCD3-201ENST00000262188 HUNKP57058 714 aa31.94■■■□□ 2.7
SMARCD3-201ENST00000262188 SH2D4AQ9H788 454 aa31.94■■■□□ 2.7
SMARCD3-201ENST00000262188 FUT2Q10981 343 aa31.93■■■□□ 2.7
SMARCD3-201ENST00000262188 PDCL3Q9H2J4 239 aa31.93■■■□□ 2.7
SMARCD3-201ENST00000262188 KIF5BP33176 963 aa31.92■■■□□ 2.7
SMARCD3-201ENST00000262188 RBM28Q9NW13 759 aaKnown RBP31.92■■■□□ 2.7
SMARCD3-201ENST00000262188 CYTH3O43739 400 aa31.92■■■□□ 2.7
SMARCD3-201ENST00000262188 GJB2P29033 226 aa31.92■■■□□ 2.7
SMARCD3-201ENST00000262188 SAMD1Q6SPF0 538 aaPredicted RBP31.92■■■□□ 2.7
SMARCD3-201ENST00000262188 DCAF4Q8WV16 495 aa31.92■■■□□ 2.7
SMARCD3-201ENST00000262188 MAP3K14Q99558 947 aa31.92■■■□□ 2.7
SMARCD3-201ENST00000262188 SLC26A6Q9BXS9 759 aa31.92■■■□□ 2.7
SMARCD3-201ENST00000262188 VAT1LQ9HCJ6 419 aa31.92■■■□□ 2.7
SMARCD3-201ENST00000262188 SMC3Q9UQE7 1217 aa31.92■■■□□ 2.7
SMARCD3-201ENST00000262188 FDPSP14324 419 aaKnown RBP31.91■■■□□ 2.7
SMARCD3-201ENST00000262188 FOSBP53539 338 aa31.91■■■□□ 2.7
SMARCD3-201ENST00000262188 PPATQ06203 517 aa31.91■■■□□ 2.7
SMARCD3-201ENST00000262188 GMCL1Q96IK5 515 aa31.91■■■□□ 2.7
SMARCD3-201ENST00000262188 BMP3P12645 472 aa31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 INTS4Q96HW7 963 aaKnown RBP31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 ZSCAN21Q9Y5A6 473 aaPredicted RBP31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 CNTNAP5Q8WYK1 1306 aa31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 CCDC196A0A1B0GTZ2 297 aa31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 TMEM232C9JQI7 657 aa31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 DHX16O60231 1041 aaKnown RBP31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 ASPRV1Q53RT3 343 aa31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 SMARCC2Q8TAQ2 1214 aa31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 AIFM3Q96NN9 605 aa31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 FBXO28Q9NVF7 368 aa31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 SYNPO2Q9UMS6 1093 aa31.9■■■□□ 2.7
SMARCD3-201ENST00000262188 IFNAR1P17181 557 aa31.89■■■□□ 2.7
SMARCD3-201ENST00000262188 VCAM1P19320 739 aa31.89■■■□□ 2.7
SMARCD3-201ENST00000262188 SAPCD2Q86UD0 394 aa31.88■■■□□ 2.69
SMARCD3-201ENST00000262188 PTPRFP10586 1907 aa31.88■■■□□ 2.69
SMARCD3-201ENST00000262188 SNAP25P60880 206 aa31.88■■■□□ 2.69
SMARCD3-201ENST00000262188 PPIL2Q13356 520 aa31.88■■■□□ 2.69
SMARCD3-201ENST00000262188 LLPHQ9BRT6 129 aaKnown RBP31.88■■■□□ 2.69
SMARCD3-201ENST00000262188 V9GY48 417 aaPredicted RBP31.88■■■□□ 2.69
SMARCD3-201ENST00000262188 IKQ13123 557 aaPredicted RBP31.87■■■□□ 2.69
SMARCD3-201ENST00000262188 ORC3Q9UBD5 711 aaPredicted RBP31.87■■■□□ 2.69
SMARCD3-201ENST00000262188 TPM2P07951 284 aa31.87■■■□□ 2.69
SMARCD3-201ENST00000262188 PPP2R5BQ15173 497 aa31.87■■■□□ 2.69
SMARCD3-201ENST00000262188 CPLX2Q6PUV4 134 aaKnown RBP31.87■■■□□ 2.69
SMARCD3-201ENST00000262188 WNK4Q96J92 1243 aa31.87■■■□□ 2.69
SMARCD3-201ENST00000262188 GJB4Q9NTQ9 266 aa31.87■■■□□ 2.69
SMARCD3-201ENST00000262188 USP14P54578 494 aa31.86■■■□□ 2.69
SMARCD3-201ENST00000262188 GPATCH4Q5T3I0 446 aaKnown RBP31.86■■■□□ 2.69
SMARCD3-201ENST00000262188 RPAP3Q9H6T3 665 aaPredicted RBP31.86■■■□□ 2.69
SMARCD3-201ENST00000262188 SSRP1Q08945 709 aaKnown RBP31.85■■■□□ 2.69
SMARCD3-201ENST00000262188 TREML2Q5T2D2 321 aa31.85■■■□□ 2.69
SMARCD3-201ENST00000262188 GADL1Q6ZQY3 521 aa31.85■■■□□ 2.69
SMARCD3-201ENST00000262188 HOMER1Q86YM7 354 aa31.85■■■□□ 2.69
SMARCD3-201ENST00000262188 ABT1Q9ULW3 272 aaKnown RBP31.85■■■□□ 2.69
SMARCD3-201ENST00000262188 C19orf81C9J6K1 198 aa31.85■■■□□ 2.69
SMARCD3-201ENST00000262188 FMNL1O95466 1100 aaPredicted RBP31.85■■■□□ 2.69
SMARCD3-201ENST00000262188 PDE4CQ08493 712 aa31.85■■■□□ 2.69
SMARCD3-201ENST00000262188 ADGRF4Q8IZF3 695 aa31.85■■■□□ 2.69
SMARCD3-201ENST00000262188 TANGO6Q9C0B7 1094 aa31.85■■■□□ 2.69
SMARCD3-201ENST00000262188 CDKL5O76039 1030 aa31.84■■■□□ 2.69
SMARCD3-201ENST00000262188 GNAQP50148 359 aa31.84■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms