RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 CENPHQ9H3R5 247 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 CRB1P82279 1406 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 IKBKBO14920 756 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 PHACTR3Q96KR7 559 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 ANAPC4Q9UJX5 808 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 PAK2Q13177 524 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 ASIC2Q16515 512 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 NOSTRINQ8IVI9 506 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 GMNNO75496 209 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 SETDB1Q15047 1291 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 ARMC9Q7Z3E5 817 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 POTEDQ86YR6 584 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 KIRREL3Q8IZU9 778 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 DCAF4Q8WV16 495 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 MRFAP1L1Q96HT8 127 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 BRIP1Q9BX63 1249 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 COA1Q9GZY4 146 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 MKRN1Q9UHC7 482 aaKnown RBP4.78□□□□□ -1.64
VPS13C-202ENST00000261517 ARHGEF28Q8N1W1 1705 aaKnown RBP4.78□□□□□ -1.64
VPS13C-202ENST00000261517 MAP3K9P80192 1104 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 ZMYM1Q5SVZ6 1142 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 GBP6Q6ZN66 633 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 RSPH3Q86UC2 560 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 IPO4Q8TEX9 1081 aaKnown RBP4.78□□□□□ -1.64
VPS13C-202ENST00000261517 ZRANB1Q9UGI0 708 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 LPXNO60711 386 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 CFAP221Q4G0U5 840 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 KCNV1Q6PIU1 500 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 CCDC113Q9H0I3 377 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 BSDC1Q9NW68 430 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-202ENST00000261517 WWC3Q9ULE0 1092 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 NOLC1Q14978 699 aaKnown RBP eCLIP4.78□□□□□ -1.64
VPS13C-202ENST00000261517 BRD3Q15059 726 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 ZNF579Q8NAF0 562 aaKnown RBP4.78□□□□□ -1.64
VPS13C-202ENST00000261517 PHBP35232 272 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 DNAJC21Q5F1R6 531 aaKnown RBP4.78□□□□□ -1.64
VPS13C-202ENST00000261517 RC3H1Q5TC82 1133 aaKnown RBP4.78□□□□□ -1.64
VPS13C-202ENST00000261517 FOXP4Q8IVH2 680 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-202ENST00000261517 LARGE2Q8N3Y3 721 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 FAM167AQ96KS9 214 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 TRIM7Q9C029 511 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 KIAA1586Q9HCI6 787 aa4.78□□□□□ -1.64
VPS13C-202ENST00000261517 PDE8BO95263 885 aa4.78□□□□□ -1.65
VPS13C-202ENST00000261517 LMNB1P20700 586 aa4.78□□□□□ -1.65
VPS13C-202ENST00000261517 OSBPP22059 807 aa4.78□□□□□ -1.65
VPS13C-202ENST00000261517 POLR2MP0CAP2 368 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 TMEM206Q9H813 350 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 NRBP2Q9NSY0 501 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 MRGBPQ9NV56 204 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 IPO11Q9UI26 975 aaKnown RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 DNAI1Q9UI46 699 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 IRX3P78415 501 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 DAAM2Q86T65 1068 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 HAND2P61296 217 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 DMP1Q13316 513 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 SRRM1Q8IYB3 904 aaKnown RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 PROM2Q8N271 834 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 NOC4LQ9BVI4 516 aaKnown RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 NKIRAS1Q9NYS0 192 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 LARSQ9P2J5 1176 aaKnown RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 TTLL1O95922 423 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 SNRPFP62306 86 aaKnown RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 RNASELQ05823 741 aaKnown RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 INF2Q27J81 1249 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 KRT39Q6A163 491 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 NEK8Q86SG6 692 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 RAB3IL1Q8TBN0 382 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 CACTINQ8WUQ7 758 aaKnown RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 ADPGKQ9BRR6 497 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 SPZ1Q9BXG8 430 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 SPATA31A3Q5VYP0 1347 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 FAM208AQ9UK61 1670 aaKnown RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 CD163L1Q9NR16 1453 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 METP08581 1390 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 BACH1O14867 736 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 TBC1D8BQ0IIM8 1120 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 CCDC85AQ96PX6 553 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 VCX3BQ9H321 246 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 SAMD15Q9P1V8 674 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 SNX14Q9Y5W7 946 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 ZNF202O95125 648 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 BRD1O95696 1058 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 ARHGAP25P42331 645 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 POLA2Q14181 598 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 FYB2Q5VWT5 728 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 ABCC6O95255 1503 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 LOC102724428A0A0B4J2F2 783 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 OR52Z1P0C646 297 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 SCG2P13521 617 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 SMARCA1P28370 1054 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 SIK1P57059 783 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 ASPHQ12797 758 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 BZW1Q7L1Q6 419 aaKnown RBP4.77□□□□□ -1.65
VPS13C-202ENST00000261517 TRIM42Q8IWZ5 723 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 BLIDQ8IZY5 108 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 ODF2LQ9ULJ1 636 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 CNPY2Q9Y2B0 182 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 ROBO2Q9HCK4 1378 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 IFT172Q9UG01 1749 aa4.77□□□□□ -1.65
VPS13C-202ENST00000261517 ZNF804BA4D1E1 1349 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms