RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZNF445P59923 1031 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 SPECC1Q5M775 1068 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 NEK8Q86SG6 692 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 FAM163AQ96GL9 167 aaPredicted RBP13.12□□□□□ -0.31
VPS4A-201ENST00000254950 CNOT7Q9UIV1 285 aaKnown RBP13.12□□□□□ -0.31
VPS4A-201ENST00000254950 PCDHA7Q9UN72 937 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 CD2APQ9Y5K6 639 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 LAMB4A4D0S4 1761 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 FGFR1OPO95684 399 aaKnown RBP13.12□□□□□ -0.31
VPS4A-201ENST00000254950 LIG1P18858 919 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 RPS12P25398 132 aaKnown RBP13.12□□□□□ -0.31
VPS4A-201ENST00000254950 NSMFQ6X4W1 530 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 MICALL2Q8IY33 904 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 TMEM132AQ24JP5 1023 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 APOBEC3FQ8IUX4 373 aaKnown RBP13.12□□□□□ -0.31
VPS4A-201ENST00000254950 GJB4Q9NTQ9 266 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 ZNF70Q9UC06 446 aaPredicted RBP13.12□□□□□ -0.31
VPS4A-201ENST00000254950 ZDHHC9Q9Y397 364 aa13.12□□□□□ -0.31
VPS4A-201ENST00000254950 ARFGEF2Q9Y6D5 1785 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 FLOT1O75955 427 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 CMA1P23946 247 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 USP14P54578 494 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 CALCRLQ16602 461 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 KIF4BQ2VIQ3 1234 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 DCAF4Q8WV16 495 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 A0A1W2PQ27 194 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 A0A1W2PQ64 194 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 A0A1W2PQD8 194 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 USP17L5A8MUK1 530 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 EEF2P13639 858 aaKnown RBP13.11□□□□□ -0.31
VPS4A-201ENST00000254950 IRX3P78415 501 aaPredicted RBP13.11□□□□□ -0.31
VPS4A-201ENST00000254950 FAM151AQ8WW52 585 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 MTMR4Q9NYA4 1195 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 LRWD1Q9UFC0 647 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 TBCAO75347 108 aaKnown RBP13.11□□□□□ -0.31
VPS4A-201ENST00000254950 FOSP01100 380 aaPredicted RBP13.11□□□□□ -0.31
VPS4A-201ENST00000254950 PFKFB3Q16875 520 aaPredicted RBP13.11□□□□□ -0.31
VPS4A-201ENST00000254950 SYDE2Q5VT97 1194 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 LINC00301Q8NCQ3 95 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 GPT2Q8TD30 523 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 PSMD1Q99460 953 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 PLIN2Q99541 437 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 VPS33BQ9H267 617 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 HOMER2Q9NSB8 354 aa13.11□□□□□ -0.31
VPS4A-201ENST00000254950 OFD1O75665 1012 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 STAT2P52630 851 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 PNMA6FA0A0J9YX94 578 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 ALAS1P13196 640 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 PFKFB1P16118 471 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 GMPSP49915 693 aaPredicted RBP13.1□□□□□ -0.31
VPS4A-201ENST00000254950 RASA3Q14644 834 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 TRMT1LQ7Z2T5 733 aaKnown RBP13.1□□□□□ -0.31
VPS4A-201ENST00000254950 RASGRP4Q8TDF6 673 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 GTPBP4Q9BZE4 634 aaKnown RBP13.1□□□□□ -0.31
VPS4A-201ENST00000254950 SH3GLB2Q9NR46 395 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 PPP6R2O75170 966 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 ADCY5O95622 1261 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 PTGDRQ13258 359 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 DACT2Q5SW24 774 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 FAM160B2Q86V87 743 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 AOPEPQ8N6M6 819 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 COA7Q96BR5 231 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 FTOQ9C0B1 505 aaKnown RBP eCLIP13.1□□□□□ -0.31
VPS4A-201ENST00000254950 SENP2Q9HC62 589 aa13.1□□□□□ -0.31
VPS4A-201ENST00000254950 XRCC6P12956 609 aaKnown RBP eCLIP13.09□□□□□ -0.31
VPS4A-201ENST00000254950 CXCL9Q07325 125 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 STXBP4Q6ZWJ1 553 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 ZNF341Q9BYN7 854 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 ZNHIT6Q9NWK9 470 aaKnown RBP13.09□□□□□ -0.31
VPS4A-201ENST00000254950 R3HCC1Q9Y3T6 440 aaKnown RBP13.09□□□□□ -0.31
VPS4A-201ENST00000254950 GCOM1H8Y6P7 765 aaPredicted RBP13.09□□□□□ -0.31
VPS4A-201ENST00000254950 PSMA7O14818 248 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 NR1I2O75469 434 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 POLR2MP0CAP2 368 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 HAUS3Q68CZ6 603 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 ARID3AQ99856 593 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 F5H6K3 240 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 OR52Z1P0C646 297 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 CCT6AP40227 531 aaKnown RBP13.09□□□□□ -0.31
VPS4A-201ENST00000254950 FKBP1AP62942 108 aaKnown RBP13.09□□□□□ -0.31
VPS4A-201ENST00000254950 KLRC3Q07444 240 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 NFIAQ12857 509 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 CLEC17AQ6ZS10 378 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 PRMT6Q96LA8 375 aaPredicted RBP13.09□□□□□ -0.31
VPS4A-201ENST00000254950 AGXT2Q9BYV1 514 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 CPVLQ9H3G5 476 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 CCPG1Q9ULG6 757 aa13.09□□□□□ -0.31
VPS4A-201ENST00000254950 TMEM87AQ8NBN3 555 aa13.08□□□□□ -0.31
VPS4A-201ENST00000254950 MYOZ2Q9NPC6 264 aa13.08□□□□□ -0.31
VPS4A-201ENST00000254950 CDC37Q16543 378 aaPredicted RBP13.08□□□□□ -0.32
VPS4A-201ENST00000254950 SV2BQ7L1I2 683 aa13.08□□□□□ -0.32
VPS4A-201ENST00000254950 MCF2L2Q86YR7 1114 aa13.08□□□□□ -0.32
VPS4A-201ENST00000254950 SNX29Q8TEQ0 813 aa13.08□□□□□ -0.32
VPS4A-201ENST00000254950 TRIM47Q96LD4 638 aa13.08□□□□□ -0.32
VPS4A-201ENST00000254950 ABCA3Q99758 1704 aa13.08□□□□□ -0.32
VPS4A-201ENST00000254950 RCSD1Q6JBY9 416 aa13.08□□□□□ -0.32
VPS4A-201ENST00000254950 CLIC6Q96NY7 704 aa13.08□□□□□ -0.32
VPS4A-201ENST00000254950 HPS5Q9UPZ3 1129 aa13.08□□□□□ -0.32
VPS4A-201ENST00000254950 LMNB1P20700 586 aa13.07□□□□□ -0.32
VPS4A-201ENST00000254950 PPP4R3AQ6IN85 833 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms