RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 HLTFQ14527 1009 aaKnown RBP eCLIP15.37■□□□□ 0.05
SIX4-201ENST00000216513 DYDC1Q8WWB3 177 aa15.37■□□□□ 0.05
SIX4-201ENST00000216513 CAPZA3Q96KX2 299 aa15.37■□□□□ 0.05
SIX4-201ENST00000216513 MRPL44Q9H9J2 332 aaKnown RBP15.37■□□□□ 0.05
SIX4-201ENST00000216513 PRKAB2O43741 272 aa15.37■□□□□ 0.05
SIX4-201ENST00000216513 KIAA0754O94854 1291 aa15.37■□□□□ 0.05
SIX4-201ENST00000216513 ILDR1Q86SU0 546 aaPredicted RBP15.37■□□□□ 0.05
SIX4-201ENST00000216513 SH3RF3Q8TEJ3 882 aaPredicted RBP15.37■□□□□ 0.05
SIX4-201ENST00000216513 DIP2CQ9Y2E4 1556 aa15.37■□□□□ 0.05
SIX4-201ENST00000216513 HAUS7Q99871 368 aa15.37■□□□□ 0.05
SIX4-201ENST00000216513 ARHGEF40Q8TER5 1519 aa15.37■□□□□ 0.05
SIX4-201ENST00000216513 FOXP4Q8IVH2 680 aaPredicted RBP15.37■□□□□ 0.05
SIX4-201ENST00000216513 ZNF215Q9UL58 517 aaPredicted RBP15.37■□□□□ 0.05
SIX4-201ENST00000216513 KARSQ15046 597 aaKnown RBP15.37■□□□□ 0.05
SIX4-201ENST00000216513 NKX1-1Q15270 411 aaPredicted RBP15.37■□□□□ 0.05
SIX4-201ENST00000216513 C17orf53Q8N3J3 647 aaPredicted RBP15.37■□□□□ 0.05
SIX4-201ENST00000216513 TLR7Q9NYK1 1049 aaKnown RBP15.37■□□□□ 0.05
SIX4-201ENST00000216513 DIP2BQ9P265 1576 aa15.36■□□□□ 0.05
SIX4-201ENST00000216513 NLRP7Q8WX94 980 aa15.36■□□□□ 0.05
SIX4-201ENST00000216513 STK24Q9Y6E0 443 aa15.36■□□□□ 0.05
SIX4-201ENST00000216513 SYDE2Q5VT97 1194 aa15.36■□□□□ 0.05
SIX4-201ENST00000216513 CCDC50Q8IVM0 306 aa15.36■□□□□ 0.05
SIX4-201ENST00000216513 ALS2CR12Q96Q35 445 aa15.36■□□□□ 0.05
SIX4-201ENST00000216513 NUB1Q9Y5A7 615 aa15.36■□□□□ 0.05
SIX4-201ENST00000216513 CYP2D7A0A087X1C5 515 aa15.36■□□□□ 0.05
SIX4-201ENST00000216513 LCORLQ8N3X6 602 aa15.36■□□□□ 0.05
SIX4-201ENST00000216513 HOXC10Q9NYD6 342 aa15.36■□□□□ 0.05
SIX4-201ENST00000216513 CLTCL1P53675 1640 aa15.36■□□□□ 0.05
SIX4-201ENST00000216513 TNNI1P19237 187 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 HERC4Q5GLZ8 1057 aaPredicted RBP15.35■□□□□ 0.05
SIX4-201ENST00000216513 MMS19Q96T76 1030 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 CD19P15391 556 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 RASSF7Q02833 373 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 RDH13Q8NBN7 331 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.35■□□□□ 0.05
SIX4-201ENST00000216513 FAM49AQ9H0Q0 323 aaPredicted RBP15.35■□□□□ 0.05
SIX4-201ENST00000216513 BICDL2A1A5D9 508 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 RC3H1Q5TC82 1133 aaKnown RBP15.35■□□□□ 0.05
SIX4-201ENST00000216513 DAPK3O43293 454 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 BRAPQ7Z569 592 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 MICALL1Q8N3F8 863 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 PLEKHF1Q96S99 279 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 LIG4P49917 911 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 SF3A3Q12874 501 aaKnown RBP eCLIP15.35■□□□□ 0.05
SIX4-201ENST00000216513 ANTXR1Q9H6X2 564 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 ANKFY1Q9P2R3 1169 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 POLIQ9UNA4 740 aa15.35■□□□□ 0.05
SIX4-201ENST00000216513 ERLIN1O75477 346 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 LONRF3Q496Y0 759 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 DSCC1Q9BVC3 393 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 IFFO1Q0D2I5 559 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 RASGRF1Q13972 1273 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 TMCO3Q6UWJ1 677 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 FASTKD5Q7L8L6 764 aaKnown RBP15.34■□□□□ 0.05
SIX4-201ENST00000216513 SAMD7Q7Z3H4 446 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 GBP3Q9H0R5 595 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 PLEKHA4Q9H4M7 779 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 COPRSQ9NQ92 184 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 GOLGA6L10A0A0M3HER8 536 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 PSMD14O00487 310 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 JAKMIP2Q96AA8 810 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 MMP19Q99542 508 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 RAVER2Q9HCJ3 691 aaKnown RBP15.34■□□□□ 0.05
SIX4-201ENST00000216513 CD2APQ9Y5K6 639 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 SMIM23A6NLE4 172 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 USP17L10C9JJH3 530 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 CALUO43852 315 aaPredicted RBP15.34■□□□□ 0.05
SIX4-201ENST00000216513 NEMFO60524 1076 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 FAM83BQ5T0W9 1011 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 NELFCDQ8IXH7 590 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 RNF123Q5XPI4 1314 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 A0A1B0GVL5 298 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 CCDC66A2RUB6 948 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 EIF2AK2P19525 551 aaKnown RBP15.34■□□□□ 0.05
SIX4-201ENST00000216513 GTF2F1P35269 517 aaKnown RBP eCLIP15.34■□□□□ 0.05
SIX4-201ENST00000216513 PLCB3Q01970 1234 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 SREBF2Q12772 1141 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 NFX1Q12986 1120 aaKnown RBP15.34■□□□□ 0.05
SIX4-201ENST00000216513 RILPL1Q5EBL4 403 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 MIS18BP1Q6P0N0 1132 aa15.34■□□□□ 0.05
SIX4-201ENST00000216513 PRDX5P30044 214 aa15.33■□□□□ 0.05
SIX4-201ENST00000216513 UBASH3AP57075 661 aa15.33■□□□□ 0.05
SIX4-201ENST00000216513 GNG11P61952 73 aa15.33■□□□□ 0.05
SIX4-201ENST00000216513 ITPK1Q13572 414 aa15.33■□□□□ 0.05
SIX4-201ENST00000216513 CCDC186Q7Z3E2 898 aa15.33■□□□□ 0.05
SIX4-201ENST00000216513 DDX25Q9UHL0 483 aaKnown RBP15.33■□□□□ 0.05
SIX4-201ENST00000216513 A0A0D9SFI3 127 aa15.33■□□□□ 0.05
SIX4-201ENST00000216513 EXOC3O60645 756 aa15.33■□□□□ 0.05
SIX4-201ENST00000216513 FGAP02671 866 aa15.33■□□□□ 0.05
SIX4-201ENST00000216513 TFRCP02786 760 aaKnown RBP15.33■□□□□ 0.05
SIX4-201ENST00000216513 RNF187Q5TA31 235 aaPredicted RBP15.33■□□□□ 0.05
SIX4-201ENST00000216513 SOS2Q07890 1332 aaPredicted RBP15.33■□□□□ 0.04
SIX4-201ENST00000216513 EZRP15311 586 aaKnown RBP15.33■□□□□ 0.04
SIX4-201ENST00000216513 UBE3CQ15386 1083 aa15.33■□□□□ 0.04
SIX4-201ENST00000216513 GPATCH4Q5T3I0 446 aaKnown RBP15.33■□□□□ 0.04
SIX4-201ENST00000216513 CDC37L1Q7L3B6 337 aa15.33■□□□□ 0.04
SIX4-201ENST00000216513 SSH3Q8TE77 659 aa15.33■□□□□ 0.04
SIX4-201ENST00000216513 DBNLQ9UJU6 430 aaKnown RBP15.33■□□□□ 0.04
SIX4-201ENST00000216513 ZNF577Q9BSK1 485 aa15.33■□□□□ 0.04
SIX4-201ENST00000216513 CRACR2AQ9BSW2 395 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms