RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 MKNK2Q9HBH9 465 aa26.48■■□□□ 1.83
VTI1B-201ENST00000216456 STAP2Q9UGK3 403 aa26.48■■□□□ 1.83
VTI1B-201ENST00000216456 PARP14Q460N5 1801 aa26.48■■□□□ 1.83
VTI1B-201ENST00000216456 GREB1LQ9C091 1923 aaPredicted RBP26.47■■□□□ 1.83
VTI1B-201ENST00000216456 IGHA2P01877 340 aa26.47■■□□□ 1.83
VTI1B-201ENST00000216456 SYN1P17600 705 aa26.47■■□□□ 1.83
VTI1B-201ENST00000216456 CNGA1P29973 690 aa26.47■■□□□ 1.83
VTI1B-201ENST00000216456 DPP9Q86TI2 863 aa26.47■■□□□ 1.83
VTI1B-201ENST00000216456 ERC2O15083 957 aa26.46■■□□□ 1.83
VTI1B-201ENST00000216456 ZMYM1Q5SVZ6 1142 aa26.46■■□□□ 1.83
VTI1B-201ENST00000216456 PRAMEF19Q5SWL8 479 aa26.46■■□□□ 1.83
VTI1B-201ENST00000216456 ANO1Q5XXA6 986 aa26.46■■□□□ 1.83
VTI1B-201ENST00000216456 SHCBP1Q8NEM2 672 aa26.46■■□□□ 1.83
VTI1B-201ENST00000216456 IGKV6D-41A0A0C4DH26 115 aa26.45■■□□□ 1.82
VTI1B-201ENST00000216456 PATL2C9JE40 543 aaKnown RBP26.45■■□□□ 1.82
VTI1B-201ENST00000216456 FOXP2O15409 715 aa26.45■■□□□ 1.82
VTI1B-201ENST00000216456 CAPN2P17655 700 aa26.45■■□□□ 1.82
VTI1B-201ENST00000216456 MB21D1Q8N884 522 aa26.45■■□□□ 1.82
VTI1B-201ENST00000216456 GOPCQ9HD26 462 aa26.45■■□□□ 1.82
VTI1B-201ENST00000216456 ADAMTS5Q9UNA0 930 aa26.45■■□□□ 1.82
VTI1B-201ENST00000216456 COL11A1P12107 1806 aaPredicted RBP26.44■■□□□ 1.82
VTI1B-201ENST00000216456 COL6A1P12109 1028 aa26.44■■□□□ 1.82
VTI1B-201ENST00000216456 REPS2Q8NFH8 660 aa26.44■■□□□ 1.82
VTI1B-201ENST00000216456 CHMP4CQ96CF2 233 aa26.44■■□□□ 1.82
VTI1B-201ENST00000216456 INCENPQ9NQS7 918 aa26.44■■□□□ 1.82
VTI1B-201ENST00000216456 CLIP2Q9UDT6 1046 aa26.44■■□□□ 1.82
VTI1B-201ENST00000216456 DDX20Q9UHI6 824 aaKnown RBP26.44■■□□□ 1.82
VTI1B-201ENST00000216456 PPP1R9AQ9ULJ8 1098 aa26.44■■□□□ 1.82
VTI1B-201ENST00000216456 DNAH12Q6ZR08 3092 aa26.44■■□□□ 1.82
VTI1B-201ENST00000216456 VWA5AO00534 786 aa26.43■■□□□ 1.82
VTI1B-201ENST00000216456 NDUFB10O96000 172 aa26.43■■□□□ 1.82
VTI1B-201ENST00000216456 PGK2P07205 417 aa26.43■■□□□ 1.82
VTI1B-201ENST00000216456 CYBAP13498 195 aa26.43■■□□□ 1.82
VTI1B-201ENST00000216456 GNAT2P19087 354 aa26.43■■□□□ 1.82
VTI1B-201ENST00000216456 LRRC26Q2I0M4 334 aa26.43■■□□□ 1.82
VTI1B-201ENST00000216456 FAM47AQ5JRC9 791 aa26.43■■□□□ 1.82
VTI1B-201ENST00000216456 CEP95Q96GE4 821 aa26.43■■□□□ 1.82
VTI1B-201ENST00000216456 F5H6K3 240 aa26.42■■□□□ 1.82
VTI1B-201ENST00000216456 STRNO43815 780 aa26.42■■□□□ 1.82
VTI1B-201ENST00000216456 KLRC3Q07444 240 aa26.42■■□□□ 1.82
VTI1B-201ENST00000216456 LRRC47Q8N1G4 583 aaKnown RBP26.42■■□□□ 1.82
VTI1B-201ENST00000216456 MROH8Q9H579 483 aa26.42■■□□□ 1.82
VTI1B-201ENST00000216456 NYAP2Q9P242 653 aa26.42■■□□□ 1.82
VTI1B-201ENST00000216456 ZNF214Q9UL59 606 aaPredicted RBP26.42■■□□□ 1.82
VTI1B-201ENST00000216456 TACC3Q9Y6A5 838 aa26.42■■□□□ 1.82
VTI1B-201ENST00000216456 FRMPD3Q5JV73 1810 aa26.42■■□□□ 1.82
VTI1B-201ENST00000216456 ZNF236Q9UL36 1845 aa26.42■■□□□ 1.82
VTI1B-201ENST00000216456 VPS53Q5VIR6 699 aa26.41■■□□□ 1.82
VTI1B-201ENST00000216456 OLFML2BQ68BL8 750 aa26.4■■□□□ 1.82
VTI1B-201ENST00000216456 ZNF444Q8N0Y2 327 aaPredicted RBP26.4■■□□□ 1.82
VTI1B-201ENST00000216456 LAMA3Q16787 3333 aa26.4■■□□□ 1.82
VTI1B-201ENST00000216456 STAT3P40763 770 aa26.39■■□□□ 1.82
VTI1B-201ENST00000216456 CTDSPL2Q05D32 466 aa26.39■■□□□ 1.82
VTI1B-201ENST00000216456 PPARAQ07869 468 aa26.39■■□□□ 1.82
VTI1B-201ENST00000216456 RIOX2Q8IUF8 465 aa26.39■■□□□ 1.82
VTI1B-201ENST00000216456 MAML3Q96JK9 1138 aa26.39■■□□□ 1.82
VTI1B-201ENST00000216456 NAPBQ9H115 298 aa26.39■■□□□ 1.82
VTI1B-201ENST00000216456 MTMR4Q9NYA4 1195 aa26.39■■□□□ 1.82
VTI1B-201ENST00000216456 RIPK3Q9Y572 518 aa26.39■■□□□ 1.82
VTI1B-201ENST00000216456 SOX1O00570 391 aaPredicted RBP26.38■■□□□ 1.81
VTI1B-201ENST00000216456 FCER1AP12319 257 aa26.38■■□□□ 1.81
VTI1B-201ENST00000216456 SLC4A3P48751 1232 aa26.38■■□□□ 1.81
VTI1B-201ENST00000216456 PDE1AP54750 535 aa26.38■■□□□ 1.81
VTI1B-201ENST00000216456 HDAC1Q13547 482 aaPredicted RBP26.38■■□□□ 1.81
VTI1B-201ENST00000216456 GJC2Q5T442 439 aaPredicted RBP26.38■■□□□ 1.81
VTI1B-201ENST00000216456 MMP19Q99542 508 aa26.38■■□□□ 1.81
VTI1B-201ENST00000216456 SLF1Q9BQI6 1058 aa26.38■■□□□ 1.81
VTI1B-201ENST00000216456 SENP6Q9GZR1 1112 aaPredicted RBP26.38■■□□□ 1.81
VTI1B-201ENST00000216456 ATN1P54259 1190 aaPredicted RBP26.37■■□□□ 1.81
VTI1B-201ENST00000216456 LRRFIP1Q32MZ4 808 aaKnown RBP26.37■■□□□ 1.81
VTI1B-201ENST00000216456 ABRAQ8N0Z2 381 aa26.37■■□□□ 1.81
VTI1B-201ENST00000216456 GDF15Q99988 308 aa26.37■■□□□ 1.81
VTI1B-201ENST00000216456 NACAP1Q9BZK3 213 aa26.37■■□□□ 1.81
VTI1B-201ENST00000216456 LNPKQ9C0E8 428 aa26.37■■□□□ 1.81
VTI1B-201ENST00000216456 SLC25A27O95847 323 aa26.36■■□□□ 1.81
VTI1B-201ENST00000216456 TAL1P17542 331 aaPredicted RBP26.36■■□□□ 1.81
VTI1B-201ENST00000216456 MAGEA10P43363 369 aaPredicted RBP26.36■■□□□ 1.81
VTI1B-201ENST00000216456 TFAP4Q01664 338 aa26.36■■□□□ 1.81
VTI1B-201ENST00000216456 B4GALNT3Q6L9W6 998 aa26.36■■□□□ 1.81
VTI1B-201ENST00000216456 RASGRP2Q7LDG7 609 aa26.36■■□□□ 1.81
VTI1B-201ENST00000216456 FAM227BQ96M60 508 aa26.36■■□□□ 1.81
VTI1B-201ENST00000216456 MYCNP04198 464 aaPredicted RBP26.35■■□□□ 1.81
VTI1B-201ENST00000216456 CPXCR1Q8N123 301 aa26.35■■□□□ 1.81
VTI1B-201ENST00000216456 NEDD1Q8NHV4 660 aa26.35■■□□□ 1.81
VTI1B-201ENST00000216456 KIFC2Q96AC6 838 aa26.35■■□□□ 1.81
VTI1B-201ENST00000216456 ZBTB47Q9UFB7 747 aaPredicted RBP26.35■■□□□ 1.81
VTI1B-201ENST00000216456 MYH4Q9Y623 1939 aa26.34■■□□□ 1.81
VTI1B-201ENST00000216456 A0A0D9SFI3 127 aa26.34■■□□□ 1.81
VTI1B-201ENST00000216456 NMT2O60551 498 aa26.34■■□□□ 1.81
VTI1B-201ENST00000216456 TSPY3P0CV98 308 aa26.34■■□□□ 1.81
VTI1B-201ENST00000216456 TSPY8P0CW00 308 aa26.34■■□□□ 1.81
VTI1B-201ENST00000216456 ZNF792Q3KQV3 632 aa26.34■■□□□ 1.81
VTI1B-201ENST00000216456 SNRNP48Q6IEG0 339 aaKnown RBP26.34■■□□□ 1.81
VTI1B-201ENST00000216456 MKL1Q969V6 931 aa26.34■■□□□ 1.81
VTI1B-201ENST00000216456 LRCH3Q96II8 777 aa26.34■■□□□ 1.81
VTI1B-201ENST00000216456 RAVER2Q9HCJ3 691 aaKnown RBP26.34■■□□□ 1.81
VTI1B-201ENST00000216456 DDX52Q9Y2R4 599 aaKnown RBP eCLIP26.34■■□□□ 1.81
VTI1B-201ENST00000216456 ZNFX1Q9P2E3 1918 aaKnown RBP26.33■■□□□ 1.81
VTI1B-201ENST00000216456 TTLL1O95922 423 aa26.33■■□□□ 1.81
VTI1B-201ENST00000216456 IGHDP01880 384 aa26.33■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms