RNA–Protein interactions for RNA: ENSMUST00000033088.7

Rnf40-201, Transcript of E3 ubiquitin-protein ligase BRE1B, mousemouse

TSL 5 BASIC

Gene Rnf40, Length 3,906 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40-201ENSMUST00000033088 Traf3ip3Q8C0G2 513 aa11.87□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Lrrc41Q8K1C9 807 aa11.87□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Foxp4Q9DBY0 795 aaKnown RBP11.87□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Zbtb12Q9Z150 459 aa11.87□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Abcc4E9Q236 1325 aa11.87□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Eya2O08575 532 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 GssP51855 474 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Opa1P58281 960 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Ccdc160Q3UYG1 323 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Ctnna3Q65CL1 895 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Tekt3Q6X6Z7 490 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Myl6bQ8CI43 207 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Cacnb1Q8R3Z5 597 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Emilin1Q99K41 1017 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Cyp2d11P24457 504 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Usp5P56399 858 aaKnown RBP11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Trim80Q3V061 624 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Igf2bp2Q5SF07 592 aaKnown RBP11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 PicalmQ7M6Y3 660 aaKnown RBP11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Hook2Q7TMK6 716 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Cadps2Q8BYR5 1297 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Lsm14bQ8CGC4 385 aaKnown RBP11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Mis12Q9CY25 206 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Pkd2l2Q9JLG4 621 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 H2afxP27661 143 aaKnown RBP11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Oxr1Q4KMM3 866 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Tsg101Q61187 391 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Zbed4Q80WQ9 1168 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Ccdc172Q810N9 267 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Ufl1Q8CCJ3 793 aaKnown RBP11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Tmem143Q8VD26 458 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Klhl40Q9D783 621 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Riok3Q9DBU3 519 aaKnown RBP11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Copb1Q9JIF7 953 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Nid2O88322 1403 aa11.86□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Arfgef2A2A5R2 1792 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Akap2O54931 893 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Ap1m1P35585 423 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 AdkP55264 361 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Krt14Q61781 484 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Cep131Q62036 1060 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Arfgap2Q99K28 520 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 C2cd2E9Q3C1 696 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Zfp408H7BX78 710 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Ncf2O70145 525 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Cdr2P97817 455 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Nlrp9aQ66X03 949 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Krt77Q6IFZ6 572 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Dnph1Q80VJ3 173 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Nop53Q8BK35 484 aaKnown RBP11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 ZgpatQ8VDM1 511 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Rbm43Q99J64 343 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Rdm1Q9CQK3 281 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Mtmr7Q9Z2C9 660 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Tet3Q8BG87 1668 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Lrrc36Q3V0M2 755 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Gpbp1Q6NXH3 473 aaKnown RBP11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Appbp2Q9DAX9 585 aa11.85□□□□□ -0.51
Rnf40-201ENSMUST00000033088 NeblQ0II04 452 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 MaeaQ4VC33 396 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 PsdQ5DTT2 1024 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Nek5Q7TSC3 627 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Lrrc1Q80VQ1 524 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 4930572O03RikQ8C5Y0 211 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Eif3bQ8JZQ9 803 aaKnown RBP11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Zmynd10Q99ML0 440 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 AdarQ99MU3 1178 aaKnown RBP11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Dbndd2Q9CRD4 158 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Saal1Q9D2C2 474 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Mrps9Q9D7N3 390 aaKnown RBP11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Iqcj-Schip1A0A088MLT8 559 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Phldb3E9QAF4 648 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Schip1P0DPB4 484 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Abcb4P21440 1276 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Llgl2Q3TJ91 1027 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Slf2Q6P9P0 1278 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Pcdhb14Q6PB90 796 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Fam160b2Q80YR2 744 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Ppp1r37Q8BKR5 712 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Znf428Q8C1M2 176 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Shtn1Q8K2Q9 631 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Eif3cQ8R1B4 911 aaKnown RBP11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Znf287Q9EQB9 759 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 SufuQ9Z0P7 484 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Simc1E9Q6E9 1354 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Igsf1Q7TQA1 1317 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Myo1eE9Q634 1107 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Mapkapk5O54992 473 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Fam207aP58468 219 aaKnown RBP11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Lzts1P60853 599 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Myo1fP70248 1099 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Ccdc33Q3ULW6 985 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Nab2Q61127 525 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Mb21d2Q8C525 428 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Zkscan3Q91VW9 553 aa11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Rrp1bQ91YK2 724 aaKnown RBP11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 RarsQ9D0I9 660 aaKnown RBP11.84□□□□□ -0.51
Rnf40-201ENSMUST00000033088 Cnksr1A2A9K7 700 aa11.83□□□□□ -0.52
Rnf40-201ENSMUST00000033088 Skor2A7M7C7 1008 aa11.83□□□□□ -0.52
Rnf40-201ENSMUST00000033088 Nova2D3YVV7 556 aaKnown RBP11.83□□□□□ -0.52
Retrieved 100 of 22,080 RNA–protein pairs in 21.2 ms