RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 MORC2Q9Y6X9 1032 aaPredicted RBP21.18■□□□□ 0.98
CLN3-263ENST00000637871 ECM29Q5VYK3 1845 aa21.18■□□□□ 0.98
CLN3-263ENST00000637871 BTDP43251 543 aa21.17■□□□□ 0.98
CLN3-263ENST00000637871 CACNB3P54284 484 aa21.17■□□□□ 0.98
CLN3-263ENST00000637871 SNW1Q13573 536 aaKnown RBP21.17■□□□□ 0.98
CLN3-263ENST00000637871 ZBED3Q96IU2 234 aaPredicted RBP21.17■□□□□ 0.98
CLN3-263ENST00000637871 ZDHHC15Q96MV8 337 aa21.17■□□□□ 0.98
CLN3-263ENST00000637871 TIGD1Q96MW7 591 aa21.17■□□□□ 0.98
CLN3-263ENST00000637871 MAP3K14Q99558 947 aa21.17■□□□□ 0.98
CLN3-263ENST00000637871 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.17■□□□□ 0.98
CLN3-263ENST00000637871 TDRD3Q9H7E2 651 aaKnown RBP21.17■□□□□ 0.98
CLN3-263ENST00000637871 PRPF3O43395 683 aaKnown RBP21.16■□□□□ 0.98
CLN3-263ENST00000637871 MMP1P03956 469 aa21.16■□□□□ 0.98
CLN3-263ENST00000637871 RXRAP19793 462 aa21.16■□□□□ 0.98
CLN3-263ENST00000637871 HHIPL2Q6UWX4 724 aa21.16■□□□□ 0.98
CLN3-263ENST00000637871 NBPF11Q86T75 865 aa21.16■□□□□ 0.98
CLN3-263ENST00000637871 FMR1NBQ8N0W7 255 aaPredicted RBP21.16■□□□□ 0.98
CLN3-263ENST00000637871 ENAHQ8N8S7 591 aaPredicted RBP21.16■□□□□ 0.98
CLN3-263ENST00000637871 FAM163AQ96GL9 167 aaPredicted RBP21.16■□□□□ 0.98
CLN3-263ENST00000637871 RTN4Q9NQC3 1192 aaKnown RBP21.16■□□□□ 0.98
CLN3-263ENST00000637871 USP25Q9UHP3 1055 aa21.16■□□□□ 0.98
CLN3-263ENST00000637871 CLIC4Q9Y696 253 aa21.16■□□□□ 0.98
CLN3-263ENST00000637871 KIF28PB7ZC32 967 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 HDLBPQ00341 1268 aaKnown RBP21.15■□□□□ 0.98
CLN3-263ENST00000637871 RILPL1Q5EBL4 403 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 ZKSCAN3Q9BRR0 538 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 MYL10Q9BUA6 226 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 ANO10Q9NW15 660 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 GGA3Q9NZ52 723 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 KIF3CO14782 793 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 PPFIA3O75145 1194 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 PTMAP06454 111 aaKnown RBP21.15■□□□□ 0.98
CLN3-263ENST00000637871 STX1AQ16623 288 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 USP50Q70EL3 339 aaPredicted RBP21.15■□□□□ 0.98
CLN3-263ENST00000637871 NOSTRINQ8IVI9 506 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 CCDC144CPQ8IYA2 1237 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 MTMR14Q8NCE2 650 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 NUP133Q8WUM0 1156 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 ANKS1AQ92625 1134 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 CEP131Q9UPN4 1083 aa21.15■□□□□ 0.98
CLN3-263ENST00000637871 FAM237AA0A1B0GTK4 181 aa21.14■□□□□ 0.97
CLN3-263ENST00000637871 GOLGA6L6A8MZA4 724 aa21.14■□□□□ 0.97
CLN3-263ENST00000637871 ADCY5O95622 1261 aa21.14■□□□□ 0.97
CLN3-263ENST00000637871 USP5P45974 858 aa21.14■□□□□ 0.97
CLN3-263ENST00000637871 C12orf60Q5U649 245 aa21.14■□□□□ 0.97
CLN3-263ENST00000637871 ANGEL2Q5VTE6 544 aaKnown RBP21.14■□□□□ 0.97
CLN3-263ENST00000637871 CKAP2LQ8IYA6 745 aa21.14■□□□□ 0.97
CLN3-263ENST00000637871 FTOQ9C0B1 505 aaKnown RBP eCLIP21.14■□□□□ 0.97
CLN3-263ENST00000637871 MKRN1Q9UHC7 482 aaKnown RBP21.14■□□□□ 0.97
CLN3-263ENST00000637871 CLEC11AQ9Y240 323 aa21.14■□□□□ 0.97
CLN3-263ENST00000637871 ZKSCAN5Q9Y2L8 839 aa21.14■□□□□ 0.97
CLN3-263ENST00000637871 ROBO3Q96MS0 1386 aa21.14■□□□□ 0.97
CLN3-263ENST00000637871 CDK5RAP2Q96SN8 1893 aa21.13■□□□□ 0.97
CLN3-263ENST00000637871 POLR2AP24928 1970 aaKnown RBP21.13■□□□□ 0.97
CLN3-263ENST00000637871 CUTAO60888 179 aa21.13■□□□□ 0.97
CLN3-263ENST00000637871 CDC42EP5Q6NZY7 148 aa21.13■□□□□ 0.97
CLN3-263ENST00000637871 DLK2Q6UY11 383 aa21.13■□□□□ 0.97
CLN3-263ENST00000637871 DGKHQ86XP1 1220 aa21.13■□□□□ 0.97
CLN3-263ENST00000637871 ELOA2Q8IYF1 753 aaPredicted RBP21.13■□□□□ 0.97
CLN3-263ENST00000637871 FAM177A1Q8N128 213 aaPredicted RBP21.13■□□□□ 0.97
CLN3-263ENST00000637871 SH3RF3Q8TEJ3 882 aaPredicted RBP21.13■□□□□ 0.97
CLN3-263ENST00000637871 MRIQ9BWK5 157 aa21.13■□□□□ 0.97
CLN3-263ENST00000637871 NAT10Q9H0A0 1025 aaKnown RBP21.13■□□□□ 0.97
CLN3-263ENST00000637871 GOLPH3LQ9H4A5 285 aa21.13■□□□□ 0.97
CLN3-263ENST00000637871 VEZTQ9HBM0 779 aa21.13■□□□□ 0.97
CLN3-263ENST00000637871 TCP11L1Q9NUJ3 509 aa21.13■□□□□ 0.97
CLN3-263ENST00000637871 GPR75-ASB3A0A0A6YYF3 556 aa21.12■□□□□ 0.97
CLN3-263ENST00000637871 KIF5BP33176 963 aa21.12■□□□□ 0.97
CLN3-263ENST00000637871 TROAPQ12815 778 aa21.12■□□□□ 0.97
CLN3-263ENST00000637871 ANO6Q4KMQ2 910 aa21.12■□□□□ 0.97
CLN3-263ENST00000637871 CTCFLQ8NI51 663 aaPredicted RBP21.12■□□□□ 0.97
CLN3-263ENST00000637871 SDF4Q9BRK5 362 aa21.12■□□□□ 0.97
CLN3-263ENST00000637871 USP40Q9NVE5 1235 aa21.12■□□□□ 0.97
CLN3-263ENST00000637871 MCM9Q9NXL9 1143 aa21.12■□□□□ 0.97
CLN3-263ENST00000637871 ZNF500O60304 480 aaPredicted RBP21.11■□□□□ 0.97
CLN3-263ENST00000637871 BMP15O95972 392 aa21.11■□□□□ 0.97
CLN3-263ENST00000637871 ZNF165P49910 485 aa21.11■□□□□ 0.97
CLN3-263ENST00000637871 RHBDL3P58872 404 aa21.11■□□□□ 0.97
CLN3-263ENST00000637871 AXDND1Q5T1B0 1012 aaPredicted RBP21.11■□□□□ 0.97
CLN3-263ENST00000637871 MAP1SQ66K74 1059 aaPredicted RBP21.11■□□□□ 0.97
CLN3-263ENST00000637871 PNMA8AQ86V59 439 aaPredicted RBP21.11■□□□□ 0.97
CLN3-263ENST00000637871 AIFM3Q96NN9 605 aa21.11■□□□□ 0.97
CLN3-263ENST00000637871 BRMS1Q9HCU9 246 aa21.11■□□□□ 0.97
CLN3-263ENST00000637871 ZNF70Q9UC06 446 aaPredicted RBP21.11■□□□□ 0.97
CLN3-263ENST00000637871 LAMB1P07942 1786 aa21.11■□□□□ 0.97
CLN3-263ENST00000637871 GNAQP50148 359 aa21.11■□□□□ 0.97
CLN3-263ENST00000637871 NFIAQ12857 509 aa21.11■□□□□ 0.97
CLN3-263ENST00000637871 PTPAQ15257 358 aa21.11■□□□□ 0.97
CLN3-263ENST00000637871 SPDYE2Q495Y8 402 aa21.11■□□□□ 0.97
CLN3-263ENST00000637871 DIS3L2Q8IYB7 885 aaKnown RBP21.11■□□□□ 0.97
CLN3-263ENST00000637871 CBX8Q9HC52 389 aa21.11■□□□□ 0.97
CLN3-263ENST00000637871 TSPY2A6NKD2 308 aa21.1■□□□□ 0.97
CLN3-263ENST00000637871 TCP10L2B9ZVM9 353 aa21.1■□□□□ 0.97
CLN3-263ENST00000637871 MMP14P50281 582 aa21.1■□□□□ 0.97
CLN3-263ENST00000637871 ZRSR1Q15695 479 aaKnown RBP21.1■□□□□ 0.97
CLN3-263ENST00000637871 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.1■□□□□ 0.97
CLN3-263ENST00000637871 ADM5C9JUS6 153 aa21.09■□□□□ 0.97
CLN3-263ENST00000637871 MYO1BO43795 1136 aa21.09■□□□□ 0.97
CLN3-263ENST00000637871 FUT2Q10981 343 aa21.09■□□□□ 0.97
CLN3-263ENST00000637871 PICALMQ13492 652 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms