RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 PDE6AP16499 860 aa23.52■■□□□ 1.36
CLN3-262ENST00000637699 TTF1Q15361 905 aaPredicted RBP23.52■■□□□ 1.36
CLN3-262ENST00000637699 ANO1Q5XXA6 986 aa23.52■■□□□ 1.36
CLN3-262ENST00000637699 PRKAG2Q9UGJ0 569 aa23.52■■□□□ 1.36
CLN3-262ENST00000637699 RTP1P59025 263 aa23.51■■□□□ 1.35
CLN3-262ENST00000637699 SDR42E1Q8WUS8 393 aa23.51■■□□□ 1.35
CLN3-262ENST00000637699 SPATC1LQ9H0A9 340 aa23.51■■□□□ 1.35
CLN3-262ENST00000637699 ATP11BQ9Y2G3 1177 aa23.51■■□□□ 1.35
CLN3-262ENST00000637699 UNC80Q8N2C7 3258 aa23.51■■□□□ 1.35
CLN3-262ENST00000637699 NAV1Q8NEY1 1877 aa23.5■■□□□ 1.35
CLN3-262ENST00000637699 STRNO43815 780 aa23.5■■□□□ 1.35
CLN3-262ENST00000637699 IGHA2P01877 340 aa23.5■■□□□ 1.35
CLN3-262ENST00000637699 MYCNP04198 464 aaPredicted RBP23.5■■□□□ 1.35
CLN3-262ENST00000637699 CYP2D6P10635 497 aa23.5■■□□□ 1.35
CLN3-262ENST00000637699 ERCC3P19447 782 aa23.5■■□□□ 1.35
CLN3-262ENST00000637699 KIAA1755Q5JYT7 1200 aa23.5■■□□□ 1.35
CLN3-262ENST00000637699 SLC44A5Q8NCS7 719 aa23.5■■□□□ 1.35
CLN3-262ENST00000637699 ARRDC4Q8NCT1 418 aa23.5■■□□□ 1.35
CLN3-262ENST00000637699 FAM161BQ96MY7 647 aa23.5■■□□□ 1.35
CLN3-262ENST00000637699 BCL11AQ9H165 835 aa23.5■■□□□ 1.35
CLN3-262ENST00000637699 ZNF532Q9HCE3 1301 aa23.5■■□□□ 1.35
CLN3-262ENST00000637699 POTEB2H3BUK9 544 aa23.49■■□□□ 1.35
CLN3-262ENST00000637699 APBB1O00213 710 aa23.49■■□□□ 1.35
CLN3-262ENST00000637699 COBLO75128 1261 aa23.49■■□□□ 1.35
CLN3-262ENST00000637699 PLS1Q14651 629 aa23.49■■□□□ 1.35
CLN3-262ENST00000637699 OLFML2BQ68BL8 750 aa23.49■■□□□ 1.35
CLN3-262ENST00000637699 RHPN1Q8TCX5 695 aa23.49■■□□□ 1.35
CLN3-262ENST00000637699 DNAJC2Q99543 621 aaKnown RBP23.49■■□□□ 1.35
CLN3-262ENST00000637699 DCP1AQ9NPI6 582 aaPredicted RBP23.49■■□□□ 1.35
CLN3-262ENST00000637699 GOLIM4O00461 696 aa23.48■■□□□ 1.35
CLN3-262ENST00000637699 HSP90AB4PQ58FF6 505 aa23.48■■□□□ 1.35
CLN3-262ENST00000637699 PRAMEF19Q5SWL8 479 aa23.48■■□□□ 1.35
CLN3-262ENST00000637699 SAMD1Q6SPF0 538 aaPredicted RBP23.48■■□□□ 1.35
CLN3-262ENST00000637699 TMEM179Q6ZVK1 233 aa23.48■■□□□ 1.35
CLN3-262ENST00000637699 LCORLQ8N3X6 602 aa23.48■■□□□ 1.35
CLN3-262ENST00000637699 SHCBP1Q8NEM2 672 aa23.48■■□□□ 1.35
CLN3-262ENST00000637699 DYNLL2Q96FJ2 89 aa23.48■■□□□ 1.35
CLN3-262ENST00000637699 KBTBD13C9JR72 458 aa23.47■■□□□ 1.35
CLN3-262ENST00000637699 HNRNPUQ00839 825 aaKnown RBP eCLIP23.47■■□□□ 1.35
CLN3-262ENST00000637699 FAM109BQ6ICB4 259 aaPredicted RBP23.47■■□□□ 1.35
CLN3-262ENST00000637699 SLC39A5Q6ZMH5 540 aa23.47■■□□□ 1.35
CLN3-262ENST00000637699 NCAPG2Q86XI2 1143 aa23.47■■□□□ 1.35
CLN3-262ENST00000637699 CLEC10AQ8IUN9 316 aa23.47■■□□□ 1.35
CLN3-262ENST00000637699 SPICE1Q8N0Z3 855 aa23.47■■□□□ 1.35
CLN3-262ENST00000637699 PANK1Q8TE04 598 aa23.47■■□□□ 1.35
CLN3-262ENST00000637699 GUCD1Q96NT3 240 aa23.47■■□□□ 1.35
CLN3-262ENST00000637699 TCRBV5S4A2TA0A5A2 114 aa23.46■■□□□ 1.35
CLN3-262ENST00000637699 SEPT4O43236 478 aa23.46■■□□□ 1.35
CLN3-262ENST00000637699 FLOT1O75955 427 aa23.46■■□□□ 1.35
CLN3-262ENST00000637699 DSG3P32926 999 aa23.46■■□□□ 1.35
CLN3-262ENST00000637699 CLASRPQ8N2M8 674 aaKnown RBP23.46■■□□□ 1.35
CLN3-262ENST00000637699 MB21D1Q8N884 522 aa23.46■■□□□ 1.35
CLN3-262ENST00000637699 ATG4CQ96DT6 458 aa23.46■■□□□ 1.35
CLN3-262ENST00000637699 MROH8Q9H579 483 aa23.46■■□□□ 1.35
CLN3-262ENST00000637699 ARMT1Q9H993 441 aa23.46■■□□□ 1.35
CLN3-262ENST00000637699 PRDM5Q9NQX1 630 aaPredicted RBP23.46■■□□□ 1.35
CLN3-262ENST00000637699 SLC5A4Q9NY91 659 aa23.46■■□□□ 1.35
CLN3-262ENST00000637699 AKR1B1P15121 316 aa23.45■■□□□ 1.34
CLN3-262ENST00000637699 SIAH1Q8IUQ4 282 aa23.45■■□□□ 1.34
CLN3-262ENST00000637699 ARHGEF10LQ9HCE6 1279 aa23.45■■□□□ 1.34
CLN3-262ENST00000637699 SWAP70Q9UH65 585 aa23.45■■□□□ 1.34
CLN3-262ENST00000637699 RLFQ13129 1914 aa23.45■■□□□ 1.34
CLN3-262ENST00000637699 PRKAB2O43741 272 aa23.44■■□□□ 1.34
CLN3-262ENST00000637699 IFIT2P09913 472 aaKnown RBP23.44■■□□□ 1.34
CLN3-262ENST00000637699 ADCYAP1R1P41586 468 aa23.44■■□□□ 1.34
CLN3-262ENST00000637699 SLFNL1Q499Z3 407 aa23.44■■□□□ 1.34
CLN3-262ENST00000637699 FERMT2Q96AC1 680 aa23.44■■□□□ 1.34
CLN3-262ENST00000637699 ZNF236Q9UL36 1845 aa23.44■■□□□ 1.34
CLN3-262ENST00000637699 ICA1Q05084 483 aa23.43■■□□□ 1.34
CLN3-262ENST00000637699 SHHQ15465 462 aa23.43■■□□□ 1.34
CLN3-262ENST00000637699 TRIM60Q495X7 471 aa23.43■■□□□ 1.34
CLN3-262ENST00000637699 ABRAQ8N0Z2 381 aa23.43■■□□□ 1.34
CLN3-262ENST00000637699 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.43■■□□□ 1.34
CLN3-262ENST00000637699 MAML3Q96JK9 1138 aa23.43■■□□□ 1.34
CLN3-262ENST00000637699 TMX2Q9Y320 296 aa23.43■■□□□ 1.34
CLN3-262ENST00000637699 A0A0G2JMZ2 1700 aa23.42■■□□□ 1.34
CLN3-262ENST00000637699 FCER1AP12319 257 aa23.42■■□□□ 1.34
CLN3-262ENST00000637699 LRRC41Q15345 812 aa23.42■■□□□ 1.34
CLN3-262ENST00000637699 ZNF697Q5TEC3 545 aa23.42■■□□□ 1.34
CLN3-262ENST00000637699 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.42■■□□□ 1.34
CLN3-262ENST00000637699 BADQ92934 168 aa23.42■■□□□ 1.34
CLN3-262ENST00000637699 KIF1BPQ96EK5 621 aa23.42■■□□□ 1.34
CLN3-262ENST00000637699 SH2D4AQ9H788 454 aa23.42■■□□□ 1.34
CLN3-262ENST00000637699 VCPKMTQ9H867 229 aa23.42■■□□□ 1.34
CLN3-262ENST00000637699 LTBP2Q14767 1821 aa23.41■■□□□ 1.34
CLN3-262ENST00000637699 CYP2D7A0A087X1C5 515 aa23.41■■□□□ 1.34
CLN3-262ENST00000637699 SMIM22K7EJ46 135 aa23.41■■□□□ 1.34
CLN3-262ENST00000637699 MBD4O95243 580 aa23.41■■□□□ 1.34
CLN3-262ENST00000637699 FAM47AQ5JRC9 791 aa23.41■■□□□ 1.34
CLN3-262ENST00000637699 C9orf50Q5SZB4 431 aa23.41■■□□□ 1.34
CLN3-262ENST00000637699 TMEM132BQ14DG7 1078 aa23.4■■□□□ 1.34
CLN3-262ENST00000637699 SH3RF1Q7Z6J0 888 aa23.4■■□□□ 1.34
CLN3-262ENST00000637699 COL25A1Q9BXS0 654 aaPredicted RBP23.4■■□□□ 1.34
CLN3-262ENST00000637699 BOLA2Q9H3K6 86 aa23.4■■□□□ 1.34
CLN3-262ENST00000637699 PDLIM7Q9NR12 457 aa23.4■■□□□ 1.34
CLN3-262ENST00000637699 ATP8A2Q9NTI2 1148 aa23.4■■□□□ 1.34
CLN3-262ENST00000637699 PAG1Q9NWQ8 432 aa23.4■■□□□ 1.34
CLN3-262ENST00000637699 MYH8P13535 1937 aa23.39■■□□□ 1.34
CLN3-262ENST00000637699 WDR46O15213 610 aaKnown RBP23.39■■□□□ 1.33
CLN3-262ENST00000637699 ADD2P35612 726 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms