RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZNF213O14771 459 aa21.65■■□□□ 1.06
CLN3-259ENST00000637551 WDR46O15213 610 aaKnown RBP21.65■■□□□ 1.06
CLN3-259ENST00000637551 TSPY3P0CV98 308 aa21.65■■□□□ 1.06
CLN3-259ENST00000637551 TSPY8P0CW00 308 aa21.65■■□□□ 1.06
CLN3-259ENST00000637551 NOVP48745 357 aa21.65■■□□□ 1.06
CLN3-259ENST00000637551 PRMT2P55345 433 aa21.65■■□□□ 1.06
CLN3-259ENST00000637551 KIF22Q14807 665 aa21.65■■□□□ 1.06
CLN3-259ENST00000637551 SIAH1Q8IUQ4 282 aa21.65■■□□□ 1.06
CLN3-259ENST00000637551 ACER1Q8TDN7 264 aa21.65■■□□□ 1.06
CLN3-259ENST00000637551 TCP11L1Q9NUJ3 509 aa21.65■■□□□ 1.06
CLN3-259ENST00000637551 MTMR4Q9NYA4 1195 aa21.65■■□□□ 1.06
CLN3-259ENST00000637551 MGAMO43451 1857 aa21.64■■□□□ 1.06
CLN3-259ENST00000637551 A0A1W2PRG0 241 aa21.64■■□□□ 1.05
CLN3-259ENST00000637551 TTLL1O95922 423 aa21.64■■□□□ 1.05
CLN3-259ENST00000637551 EEF2P13639 858 aaKnown RBP21.64■■□□□ 1.05
CLN3-259ENST00000637551 LACTBP83111 547 aaPredicted RBP21.64■■□□□ 1.05
CLN3-259ENST00000637551 MFSD6Q6ZSS7 791 aa21.64■■□□□ 1.05
CLN3-259ENST00000637551 CNNM2Q9H8M5 875 aa21.64■■□□□ 1.05
CLN3-259ENST00000637551 MORF4L1Q9UBU8 362 aa21.64■■□□□ 1.05
CLN3-259ENST00000637551 U3KPZ7 1027 aaPredicted RBP21.64■■□□□ 1.05
CLN3-259ENST00000637551 A0A0G2JMZ2 1700 aa21.63■■□□□ 1.05
CLN3-259ENST00000637551 RLFQ13129 1914 aa21.63■■□□□ 1.05
CLN3-259ENST00000637551 CCDC178Q5BJE1 867 aa21.63■■□□□ 1.05
CLN3-259ENST00000637551 FBXO46Q6PJ61 603 aaPredicted RBP21.63■■□□□ 1.05
CLN3-259ENST00000637551 CATSPERGQ6ZRH7 1159 aa21.63■■□□□ 1.05
CLN3-259ENST00000637551 GMCL1P1Q8NEA9 526 aa21.63■■□□□ 1.05
CLN3-259ENST00000637551 TSPY2A6NKD2 308 aa21.62■■□□□ 1.05
CLN3-259ENST00000637551 CYP2C8P10632 490 aa21.62■■□□□ 1.05
CLN3-259ENST00000637551 MB21D1Q8N884 522 aa21.62■■□□□ 1.05
CLN3-259ENST00000637551 ESR2Q92731 530 aa21.62■■□□□ 1.05
CLN3-259ENST00000637551 CDC45O75419 566 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 PRDM1O75626 825 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 HERVK_113P62684 666 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 TFAP4Q01664 338 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 CTDSPL2Q05D32 466 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 KIAA1211Q6ZU35 1233 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 MAP4K1Q92918 833 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 CEP95Q96GE4 821 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 TTC14Q96N46 770 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 ESYT1Q9BSJ8 1104 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 IL25Q9H293 177 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 HOXC10Q9NYD6 342 aa21.61■■□□□ 1.05
CLN3-259ENST00000637551 KRT23Q9C075 422 aa21.6■■□□□ 1.05
CLN3-259ENST00000637551 NBPF3Q9H094 633 aa21.6■■□□□ 1.05
CLN3-259ENST00000637551 RABGAP1Q9Y3P9 1069 aa21.6■■□□□ 1.05
CLN3-259ENST00000637551 EPB41L2O43491 1005 aaKnown RBP21.59■■□□□ 1.05
CLN3-259ENST00000637551 HOXD10P28358 340 aa21.59■■□□□ 1.05
CLN3-259ENST00000637551 COG2Q14746 738 aa21.59■■□□□ 1.05
CLN3-259ENST00000637551 OTOP1Q7RTM1 612 aa21.59■■□□□ 1.05
CLN3-259ENST00000637551 RPAP3Q9H6T3 665 aaPredicted RBP21.59■■□□□ 1.05
CLN3-259ENST00000637551 EFCC1Q9HA90 598 aa21.59■■□□□ 1.05
CLN3-259ENST00000637551 CPA4Q9UI42 421 aa21.59■■□□□ 1.05
CLN3-259ENST00000637551 RANBP6O60518 1105 aaKnown RBP21.58■■□□□ 1.05
CLN3-259ENST00000637551 FCGRTP55899 365 aa21.58■■□□□ 1.05
CLN3-259ENST00000637551 TBC1D10CQ8IV04 446 aa21.58■■□□□ 1.05
CLN3-259ENST00000637551 FXR1P51114 621 aaKnown RBP eCLIP21.57■■□□□ 1.04
CLN3-259ENST00000637551 CCNA1P78396 465 aa21.57■■□□□ 1.04
CLN3-259ENST00000637551 ZYXQ15942 572 aaKnown RBP21.57■■□□□ 1.04
CLN3-259ENST00000637551 RCSD1Q6JBY9 416 aa21.57■■□□□ 1.04
CLN3-259ENST00000637551 IQCA1Q86XH1 822 aa21.57■■□□□ 1.04
CLN3-259ENST00000637551 CD99L2Q8TCZ2 262 aa21.57■■□□□ 1.04
CLN3-259ENST00000637551 GMCL1Q96IK5 515 aa21.57■■□□□ 1.04
CLN3-259ENST00000637551 P2RX7Q99572 595 aaKnown RBP21.57■■□□□ 1.04
CLN3-259ENST00000637551 F5H6K3 240 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 PLA2G6O60733 806 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 FDX1P10109 184 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 HAND2P61296 217 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 KLRC3Q07444 240 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 DGKHQ86XP1 1220 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 CLEC10AQ8IUN9 316 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 GPRC5AQ8NFJ5 357 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 MTA3Q9BTC8 594 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 IL17RBQ9NRM6 502 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 CLIP2Q9UDT6 1046 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 ADAMTS5Q9UNA0 930 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 HTTP42858 3142 aa21.56■■□□□ 1.04
CLN3-259ENST00000637551 SPDYE16A6NNV3 312 aaPredicted RBP21.55■■□□□ 1.04
CLN3-259ENST00000637551 MAPK4P31152 587 aa21.55■■□□□ 1.04
CLN3-259ENST00000637551 TRDNQ13061 729 aa21.55■■□□□ 1.04
CLN3-259ENST00000637551 FAM47AQ5JRC9 791 aa21.55■■□□□ 1.04
CLN3-259ENST00000637551 ANKRD13CQ8N6S4 541 aa21.55■■□□□ 1.04
CLN3-259ENST00000637551 ANKS1AQ92625 1134 aa21.55■■□□□ 1.04
CLN3-259ENST00000637551 TANGO6Q9C0B7 1094 aa21.55■■□□□ 1.04
CLN3-259ENST00000637551 LSG1Q9H089 658 aaKnown RBP21.55■■□□□ 1.04
CLN3-259ENST00000637551 TOMM22Q9NS69 142 aa21.55■■□□□ 1.04
CLN3-259ENST00000637551 TRIM17Q9Y577 477 aa21.55■■□□□ 1.04
CLN3-259ENST00000637551 TACC3Q9Y6A5 838 aa21.55■■□□□ 1.04
CLN3-259ENST00000637551 NEDD4P46934 1319 aa21.55■■□□□ 1.04
CLN3-259ENST00000637551 NDUFB10O96000 172 aa21.54■■□□□ 1.04
CLN3-259ENST00000637551 TOP1P11387 765 aaKnown RBP21.54■■□□□ 1.04
CLN3-259ENST00000637551 PSMC4P43686 418 aa21.54■■□□□ 1.04
CLN3-259ENST00000637551 ERVK-9P63128 1117 aa21.54■■□□□ 1.04
CLN3-259ENST00000637551 ERVK-24P63145 666 aa21.54■■□□□ 1.04
CLN3-259ENST00000637551 ATP2B2Q01814 1243 aa21.54■■□□□ 1.04
CLN3-259ENST00000637551 PTH1RQ03431 593 aa21.54■■□□□ 1.04
CLN3-259ENST00000637551 STK11IPQ8N1F8 1099 aa21.54■■□□□ 1.04
CLN3-259ENST00000637551 RBPJLQ9UBG7 517 aa21.54■■□□□ 1.04
CLN3-259ENST00000637551 STX8Q9UNK0 236 aa21.54■■□□□ 1.04
CLN3-259ENST00000637551 PTPN22Q9Y2R2 807 aa21.54■■□□□ 1.04
CLN3-259ENST00000637551 ZNF236Q9UL36 1845 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms