RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 BAZ2AQ9UIF9 1905 aaKnown RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 IFIT3O14879 490 aaKnown RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 MCM3P25205 808 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 DSG3P32926 999 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 DPCR1Q3MIW9 517 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 KRT40Q6A162 431 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 CCDC70Q6NSX1 233 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 RGMBQ6NW40 437 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 LDHAL6AQ6ZMR3 332 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 C2CD5Q86YS7 1000 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 MB21D2Q8IYB1 491 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 GOLGA1Q92805 767 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 UBAC1Q9BSL1 405 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 MTA3Q9BTC8 594 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 FAM50BQ9Y247 325 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 RTL9Q8NET4 1388 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 SYNGAP1Q96PV0 1343 aa4.53□□□□□ -1.68
SCN1A-214ENST00000637038 GREB1LQ9C091 1923 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-214ENST00000637038 MANSC4A6NHS7 340 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 PATL2C9JE40 543 aaKnown RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 M0R2C6 588 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 IPO7O95373 1038 aaKnown RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 FGAP02671 866 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 DPEP1P16444 411 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 RPS12P25398 132 aaKnown RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 TXLNAP40222 546 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 GNG11P61952 73 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 HSP90B2PQ58FF3 399 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 ARMC9Q7Z3E5 817 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 MICU3Q86XE3 530 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 VPS37DQ86XT2 251 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 CEP112Q8N8E3 955 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 BAG1Q99933 345 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 ARFGAP3Q9NP61 516 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 GNL3LQ9NVN8 582 aaKnown RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 CLIC4Q9Y696 253 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 ARFGEF1Q9Y6D6 1849 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 PASKQ96RG2 1323 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 MYH8P13535 1937 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 NID2Q14112 1375 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 GNPATO15228 680 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 STX10O60499 249 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 CCDC175P0C221 793 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 MARCKSP29966 332 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 TDO2P48775 406 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 RCAN1P53805 252 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 TRIM28Q13263 835 aaKnown RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 RTN1Q16799 776 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 SLC9C2Q5TAH2 1124 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 MFSD6Q6ZSS7 791 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 CHST3Q7LGC8 479 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 GPR161Q8N6U8 529 aaKnown RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 OSBP2Q969R2 916 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 CCDC51Q96ER9 411 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 SLC26A6Q9BXS9 759 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 L2HGDHQ9H9P8 463 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 NDUFB9Q9Y6M9 179 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 LY75O60449 1722 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 MYH7BA7E2Y1 1941 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 G3V3G9 751 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 CLGNO14967 610 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 DEXIO95424 95 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 PRR29P0C7W0 189 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 SDHBP21912 280 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 TRIM14Q14142 442 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 WTAPQ15007 396 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 KRBA2Q6ZNG9 492 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 VSTM4Q8IW00 320 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 ZNF512BQ96KM6 892 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 PLA2G12BQ9BX93 195 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 NYXQ9GZU5 481 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 MTIF3Q9H2K0 278 aaKnown RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 TUBE1Q9UJT0 475 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 EP400Q96L91 3159 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 SH2B2O14492 632 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 FDPSP14324 419 aaKnown RBP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 LIFRP42702 1097 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 ALX1Q15699 326 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 RESP18Q5W5W9 173 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 SPECC1LQ69YQ0 1117 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 TTLL5Q6EMB2 1281 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 FTOQ9C0B1 505 aaKnown RBP eCLIP4.52□□□□□ -1.69
SCN1A-214ENST00000637038 RMND1Q9NWS8 449 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 KIF13BQ9NQT8 1826 aa4.52□□□□□ -1.69
SCN1A-214ENST00000637038 TRIM75PA6NK02 468 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 MAFGO15525 162 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 CALM1P0DP23 149 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 CALM2P0DP24 149 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 CALM3P0DP25 149 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 ERCC5P28715 1186 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-214ENST00000637038 ZAP70P43403 619 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 STIM1Q13586 685 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 POSTNQ15063 836 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 ZNF827Q17R98 1081 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 LRRC24Q50LG9 513 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 FAM182BQ5T319 152 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 IQCEQ6IPM2 695 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 CNGA4Q8IV77 575 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 NOSTRINQ8IVI9 506 aa4.51□□□□□ -1.69
SCN1A-214ENST00000637038 ZBTB38Q8NAP3 1195 aaPredicted RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms