RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 TNS1Q9HBL0 1735 aaKnown RBP17.96■□□□□ 0.47
CLN3-251ENST00000636853 SCNN1DP51172 638 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 ZRSR1Q15695 479 aaKnown RBP17.96■□□□□ 0.47
CLN3-251ENST00000636853 CEP57L1Q8IYX8 460 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 BRMS1Q9HCU9 246 aa17.96■□□□□ 0.47
CLN3-251ENST00000636853 BECN2A8MW95 431 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 WNT7AO00755 349 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 ADAMTS3O15072 1205 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 NLRP5P59047 1200 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 GRM4Q14833 912 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 LONRF3Q496Y0 759 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 CCDC178Q5BJE1 867 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 ISM2Q6H9L7 571 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 TNFRSF25Q93038 417 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 ZMYND15Q9H091 742 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 ZNF219Q9P2Y4 722 aaPredicted RBP17.95■□□□□ 0.46
CLN3-251ENST00000636853 MAD2L2Q9UI95 211 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 CEP131Q9UPN4 1083 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 GOLGB1Q14789 3259 aaKnown RBP17.95■□□□□ 0.46
CLN3-251ENST00000636853 TRIM75PA6NK02 468 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 ZNF500O60304 480 aaPredicted RBP17.95■□□□□ 0.46
CLN3-251ENST00000636853 ZNF75DP51815 510 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 RASGRP2Q7LDG7 609 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 AOPEPQ8N6M6 819 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 DBNDD1Q9H9R9 158 aa17.95■□□□□ 0.46
CLN3-251ENST00000636853 FOCADQ5VW36 1801 aa17.94■□□□□ 0.46
CLN3-251ENST00000636853 PNOCQ13519 176 aa17.94■□□□□ 0.46
CLN3-251ENST00000636853 PLA2G4DQ86XP0 818 aa17.94■□□□□ 0.46
CLN3-251ENST00000636853 KCNQ5Q9NR82 932 aa17.94■□□□□ 0.46
CLN3-251ENST00000636853 SUGT1Q9Y2Z0 365 aa17.94■□□□□ 0.46
CLN3-251ENST00000636853 SLC35G1Q2M3R5 365 aa17.93■□□□□ 0.46
CLN3-251ENST00000636853 GPKOWQ92917 476 aaPredicted RBP eCLIP17.93■□□□□ 0.46
CLN3-251ENST00000636853 NAT10Q9H0A0 1025 aaKnown RBP17.93■□□□□ 0.46
CLN3-251ENST00000636853 SRPRBQ9Y5M8 271 aaKnown RBP17.93■□□□□ 0.46
CLN3-251ENST00000636853 ADAMTSL1Q8N6G6 1762 aa17.93■□□□□ 0.46
CLN3-251ENST00000636853 H0YIN7 160 aa17.93■□□□□ 0.46
CLN3-251ENST00000636853 GOLGA8HP0CJ92 632 aa17.93■□□□□ 0.46
CLN3-251ENST00000636853 NLRP12P59046 1061 aa17.93■□□□□ 0.46
CLN3-251ENST00000636853 EZH2Q15910 746 aaKnown RBP17.93■□□□□ 0.46
CLN3-251ENST00000636853 KRBA2Q6ZNG9 492 aa17.93■□□□□ 0.46
CLN3-251ENST00000636853 CNNM3Q8NE01 707 aa17.93■□□□□ 0.46
CLN3-251ENST00000636853 NEDD1Q8NHV4 660 aa17.93■□□□□ 0.46
CLN3-251ENST00000636853 MAP7D2Q96T17 732 aa17.93■□□□□ 0.46
CLN3-251ENST00000636853 DDX4Q9NQI0 724 aaKnown RBP17.93■□□□□ 0.46
CLN3-251ENST00000636853 CYTH3O43739 400 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 CHRNA5P30532 468 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 ZNF174Q15697 407 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 USP49Q70CQ1 688 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 METTL16Q86W50 562 aaKnown RBP17.92■□□□□ 0.46
CLN3-251ENST00000636853 CEP95Q96GE4 821 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 CSRNP2Q9H175 543 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 FAM13BQ9NYF5 915 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 FOXN1O15353 648 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 GNAQP50148 359 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 EN1Q05925 392 aaPredicted RBP17.92■□□□□ 0.46
CLN3-251ENST00000636853 PIK3AP1Q6ZUJ8 805 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 DRC7Q8IY82 874 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 USP40Q9NVE5 1235 aa17.92■□□□□ 0.46
CLN3-251ENST00000636853 SLX4Q8IY92 1834 aa17.91■□□□□ 0.46
CLN3-251ENST00000636853 POLR2DO15514 142 aaKnown RBP17.91■□□□□ 0.46
CLN3-251ENST00000636853 QSER1Q2KHR3 1735 aa17.91■□□□□ 0.46
CLN3-251ENST00000636853 ZNF579Q8NAF0 562 aaKnown RBP17.91■□□□□ 0.46
CLN3-251ENST00000636853 CPVLQ9H3G5 476 aa17.91■□□□□ 0.46
CLN3-251ENST00000636853 PALM3A6NDB9 673 aaPredicted RBP17.91■□□□□ 0.46
CLN3-251ENST00000636853 GOLGA6L6A8MZA4 724 aa17.91■□□□□ 0.46
CLN3-251ENST00000636853 TTC38Q5R3I4 469 aa17.91■□□□□ 0.46
CLN3-251ENST00000636853 TUBE1Q9UJT0 475 aa17.91■□□□□ 0.46
CLN3-251ENST00000636853 SLC15A2Q16348 729 aa17.9■□□□□ 0.46
CLN3-251ENST00000636853 TYW1BQ6NUM6 668 aa17.9■□□□□ 0.46
CLN3-251ENST00000636853 FOXP4Q8IVH2 680 aaPredicted RBP17.9■□□□□ 0.46
CLN3-251ENST00000636853 PDILTQ8N807 584 aa17.9■□□□□ 0.46
CLN3-251ENST00000636853 KCNF1Q9H3M0 494 aa17.9■□□□□ 0.46
CLN3-251ENST00000636853 RGS17Q9UGC6 210 aaPredicted RBP17.9■□□□□ 0.46
CLN3-251ENST00000636853 NRBP1Q9UHY1 535 aa17.9■□□□□ 0.46
CLN3-251ENST00000636853 PTGS1P23219 599 aa17.89■□□□□ 0.46
CLN3-251ENST00000636853 KIAA2012Q0VF49 1180 aa17.89■□□□□ 0.46
CLN3-251ENST00000636853 STYK1Q6J9G0 422 aa17.89■□□□□ 0.46
CLN3-251ENST00000636853 CDC42EP5Q6NZY7 148 aa17.89■□□□□ 0.46
CLN3-251ENST00000636853 USP17L2Q6R6M4 530 aa17.89■□□□□ 0.46
CLN3-251ENST00000636853 POTEAQ6S8J7 498 aa17.89■□□□□ 0.46
CLN3-251ENST00000636853 SARM1Q6SZW1 724 aa17.89■□□□□ 0.46
CLN3-251ENST00000636853 SERTAD1Q9UHV2 236 aa17.89■□□□□ 0.46
CLN3-251ENST00000636853 KLRF2D3W0D1 207 aa17.89■□□□□ 0.45
CLN3-251ENST00000636853 GABPAQ06546 454 aa17.89■□□□□ 0.45
CLN3-251ENST00000636853 HEATR3Q7Z4Q2 680 aa17.89■□□□□ 0.45
CLN3-251ENST00000636853 PODNQ7Z5L7 613 aa17.89■□□□□ 0.45
CLN3-251ENST00000636853 RASGRP4Q8TDF6 673 aa17.89■□□□□ 0.45
CLN3-251ENST00000636853 TEKT1Q969V4 418 aa17.89■□□□□ 0.45
CLN3-251ENST00000636853 TOP1P11387 765 aaKnown RBP17.88■□□□□ 0.45
CLN3-251ENST00000636853 MDM2Q00987 491 aaPredicted RBP17.88■□□□□ 0.45
CLN3-251ENST00000636853 WWC2Q6AWC2 1192 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 APOBEC3HQ6NTF7 200 aaKnown RBP17.88■□□□□ 0.45
CLN3-251ENST00000636853 KIAA0825Q8IV33 1275 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 BLIDQ8IZY5 108 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 BPIFA3Q9BQP9 254 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 PCDHA5Q9Y5H7 936 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 PCDHAC2Q9Y5I4 1007 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 PARP1P09874 1014 aaKnown RBP17.88■□□□□ 0.45
CLN3-251ENST00000636853 CALML3P27482 149 aa17.88■□□□□ 0.45
CLN3-251ENST00000636853 PTGDRQ13258 359 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms