RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 MYCP01106 439 aaPredicted RBP21.39■■□□□ 1.01
CLN3-239ENST00000628023 TFAP4Q01664 338 aa21.39■■□□□ 1.01
CLN3-239ENST00000628023 GPAT2Q6NUI2 795 aa21.39■■□□□ 1.01
CLN3-239ENST00000628023 USP17L2Q6R6M4 530 aa21.39■■□□□ 1.01
CLN3-239ENST00000628023 ACER1Q8TDN7 264 aa21.39■■□□□ 1.01
CLN3-239ENST00000628023 TRIM47Q96LD4 638 aa21.39■■□□□ 1.01
CLN3-239ENST00000628023 SH2D4AQ9H788 454 aa21.39■■□□□ 1.01
CLN3-239ENST00000628023 SLC45A1Q9Y2W3 748 aa21.39■■□□□ 1.01
CLN3-239ENST00000628023 RBM8AQ9Y5S9 174 aaKnown RBP21.39■■□□□ 1.01
CLN3-239ENST00000628023 PTPRFP10586 1907 aa21.39■■□□□ 1.01
CLN3-239ENST00000628023 ADGRA2Q96PE1 1338 aa21.38■■□□□ 1.01
CLN3-239ENST00000628023 USP14P54578 494 aa21.38■■□□□ 1.01
CLN3-239ENST00000628023 FCGRTP55899 365 aa21.38■■□□□ 1.01
CLN3-239ENST00000628023 PROCA1Q8NCQ7 364 aaPredicted RBP21.38■■□□□ 1.01
CLN3-239ENST00000628023 LSG1Q9H089 658 aaKnown RBP21.38■■□□□ 1.01
CLN3-239ENST00000628023 NBPF3Q9H094 633 aa21.38■■□□□ 1.01
CLN3-239ENST00000628023 NEDD4P46934 1319 aa21.37■■□□□ 1.01
CLN3-239ENST00000628023 CYP2C8P10632 490 aa21.37■■□□□ 1.01
CLN3-239ENST00000628023 EEF2P13639 858 aaKnown RBP21.37■■□□□ 1.01
CLN3-239ENST00000628023 OSBPP22059 807 aa21.37■■□□□ 1.01
CLN3-239ENST00000628023 SH3D19Q5HYK7 790 aa21.37■■□□□ 1.01
CLN3-239ENST00000628023 MAP4K1Q92918 833 aa21.37■■□□□ 1.01
CLN3-239ENST00000628023 KIAA1683Q9H0B3 1180 aa21.37■■□□□ 1.01
CLN3-239ENST00000628023 AGTPBP1Q9UPW5 1226 aa21.37■■□□□ 1.01
CLN3-239ENST00000628023 PLIN4Q96Q06 1357 aa21.36■■□□□ 1.01
CLN3-239ENST00000628023 FGRP09769 529 aa21.36■■□□□ 1.01
CLN3-239ENST00000628023 GRK4P32298 578 aa21.36■■□□□ 1.01
CLN3-239ENST00000628023 PABPC4Q13310 644 aaKnown RBP eCLIP21.36■■□□□ 1.013e-6■■■■□ 26.6
CLN3-239ENST00000628023 NEDD1Q8NHV4 660 aa21.36■■□□□ 1.01
CLN3-239ENST00000628023 SMCR8Q8TEV9 937 aaPredicted RBP21.36■■□□□ 1.01
CLN3-239ENST00000628023 ESR2Q92731 530 aa21.36■■□□□ 1.01
CLN3-239ENST00000628023 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.36■■□□□ 1.01
CLN3-239ENST00000628023 BIN2Q9UBW5 565 aaPredicted RBP21.36■■□□□ 1.01
CLN3-239ENST00000628023 TACC3Q9Y6A5 838 aa21.36■■□□□ 1.01
CLN3-239ENST00000628023 MYPNQ86TC9 1320 aa21.35■■□□□ 1.01
CLN3-239ENST00000628023 RAD21O60216 631 aa21.35■■□□□ 1.01
CLN3-239ENST00000628023 BCRP11274 1271 aa21.35■■□□□ 1.01
CLN3-239ENST00000628023 PPP4R3BQ5MIZ7 849 aa21.35■■□□□ 1.01
CLN3-239ENST00000628023 TREML2Q5T2D2 321 aa21.35■■□□□ 1.01
CLN3-239ENST00000628023 CEP95Q96GE4 821 aa21.35■■□□□ 1.01
CLN3-239ENST00000628023 CNNM2Q9H8M5 875 aa21.35■■□□□ 1.01
CLN3-239ENST00000628023 PNMA3Q9UL41 463 aa21.35■■□□□ 1.01
CLN3-239ENST00000628023 LOC285556D6RIA3 1793 aa21.35■■□□□ 1.01
CLN3-239ENST00000628023 GREB1LQ9C091 1923 aaPredicted RBP21.35■■□□□ 1.01
CLN3-239ENST00000628023 ZSWIM8A7E2V4 1837 aa21.34■■□□□ 1.01
CLN3-239ENST00000628023 A0A1W2PRG0 241 aa21.34■■□□□ 1.01
CLN3-239ENST00000628023 CTGFP29279 349 aa21.34■■□□□ 1.01
CLN3-239ENST00000628023 TRDNQ13061 729 aa21.34■■□□□ 1.01
CLN3-239ENST00000628023 NKX2-3Q8TAU0 364 aa21.34■■□□□ 1.01
CLN3-239ENST00000628023 KRT23Q9C075 422 aa21.34■■□□□ 1.01
CLN3-239ENST00000628023 GOPCQ9HD26 462 aa21.34■■□□□ 1.01
CLN3-239ENST00000628023 EMILIN3Q9NT22 766 aa21.34■■□□□ 1.01
CLN3-239ENST00000628023 IGKV6D-41A0A0C4DH26 115 aa21.33■■□□□ 1.01
CLN3-239ENST00000628023 REC8O95072 547 aa21.33■■□□□ 1.01
CLN3-239ENST00000628023 TTLL1O95922 423 aa21.33■■□□□ 1.01
CLN3-239ENST00000628023 CYP21A2P08686 494 aa21.33■■□□□ 1.01
CLN3-239ENST00000628023 UBXN2AP68543 259 aa21.33■■□□□ 1.01
CLN3-239ENST00000628023 IRX3P78415 501 aaPredicted RBP21.33■■□□□ 1.01
CLN3-239ENST00000628023 C12orf42Q96LP6 360 aa21.33■■□□□ 1.01
CLN3-239ENST00000628023 MTMR4Q9NYA4 1195 aa21.33■■□□□ 1.01
CLN3-239ENST00000628023 NYAP2Q9P242 653 aa21.33■■□□□ 1.01
CLN3-239ENST00000628023 CLIP2Q9UDT6 1046 aa21.33■■□□□ 1.01
CLN3-239ENST00000628023 STX8Q9UNK0 236 aa21.33■■□□□ 1.01
CLN3-239ENST00000628023 TMX2Q9Y320 296 aa21.33■■□□□ 1.01
CLN3-239ENST00000628023 B4E1Z4 1266 aa21.32■■□□□ 1
CLN3-239ENST00000628023 VCAM1P19320 739 aa21.32■■□□□ 1
CLN3-239ENST00000628023 NT5C2P49902 561 aa21.32■■□□□ 1
CLN3-239ENST00000628023 RNF20Q5VTR2 975 aa21.32■■□□□ 1
CLN3-239ENST00000628023 RALYLQ86SE5 291 aaKnown RBP21.32■■□□□ 1
CLN3-239ENST00000628023 SIAH1Q8IUQ4 282 aa21.32■■□□□ 1
CLN3-239ENST00000628023 VCPKMTQ9H867 229 aa21.32■■□□□ 1
CLN3-239ENST00000628023 PCDH10Q9P2E7 1040 aa21.32■■□□□ 1
CLN3-239ENST00000628023 NMT2O60551 498 aa21.31■■□□□ 1
CLN3-239ENST00000628023 KDM4AO75164 1064 aa21.31■■□□□ 1
CLN3-239ENST00000628023 CREB3L3Q68CJ9 461 aa21.31■■□□□ 1
CLN3-239ENST00000628023 SPICE1Q8N0Z3 855 aa21.31■■□□□ 1
CLN3-239ENST00000628023 LRRC47Q8N1G4 583 aaKnown RBP21.31■■□□□ 1
CLN3-239ENST00000628023 SLAIN1Q8ND83 568 aa21.31■■□□□ 1
CLN3-239ENST00000628023 LPAR1Q92633 364 aa21.31■■□□□ 1
CLN3-239ENST00000628023 SLC27A2O14975 620 aa21.3■■□□□ 1
CLN3-239ENST00000628023 PRKCZQ05513 592 aa21.3■■□□□ 1
CLN3-239ENST00000628023 IQCA1Q86XH1 822 aa21.3■■□□□ 1
CLN3-239ENST00000628023 RPAP3Q9H6T3 665 aaPredicted RBP21.3■■□□□ 1
CLN3-239ENST00000628023 MKI67P46013 3256 aaKnown RBP21.3■■□□□ 1
CLN3-239ENST00000628023 USP17L15C9J2P7 530 aa21.29■■□□□ 1
CLN3-239ENST00000628023 USP17L13C9JLJ4 530 aa21.29■■□□□ 1
CLN3-239ENST00000628023 USP17L11C9JVI0 530 aa21.29■■□□□ 1
CLN3-239ENST00000628023 USP17L18D6R9N7 530 aa21.29■■□□□ 1
CLN3-239ENST00000628023 USP17L22D6RA61 530 aa21.29■■□□□ 1
CLN3-239ENST00000628023 USP17L17D6RBQ6 530 aa21.29■■□□□ 1
CLN3-239ENST00000628023 USP17L19D6RCP7 530 aa21.29■■□□□ 1
CLN3-239ENST00000628023 USP17L20D6RJB6 530 aa21.29■■□□□ 1
CLN3-239ENST00000628023 E7EWF7 191 aa21.29■■□□□ 1
CLN3-239ENST00000628023 TNPO2O14787 897 aaKnown RBP21.29■■□□□ 1
CLN3-239ENST00000628023 USP17L24Q0WX57 530 aa21.29■■□□□ 1
CLN3-239ENST00000628023 MTFR1Q15390 333 aa21.29■■□□□ 1
CLN3-239ENST00000628023 NCOA7Q8NI08 942 aa21.29■■□□□ 1
CLN3-239ENST00000628023 COA7Q96BR5 231 aa21.29■■□□□ 1
CLN3-239ENST00000628023 ZKSCAN3Q9BRR0 538 aa21.29■■□□□ 1
CLN3-239ENST00000628023 UBAC1Q9BSL1 405 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms