RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 ADAMTS10Q9H324 1103 aa8.72□□□□□ -1.01
VPS29-212ENST00000621131 FAM53CQ9NYF3 392 aa8.72□□□□□ -1.01
VPS29-212ENST00000621131 RBM47A0AV96 593 aaKnown RBP8.71□□□□□ -1.02
VPS29-212ENST00000621131 UBOX5O94941 541 aa8.71□□□□□ -1.02
VPS29-212ENST00000621131 GBP1P32455 592 aa8.71□□□□□ -1.02
VPS29-212ENST00000621131 CLCQ05315 142 aa8.71□□□□□ -1.02
VPS29-212ENST00000621131 MLECQ14165 292 aa8.71□□□□□ -1.02
VPS29-212ENST00000621131 ARSHQ5FYA8 562 aa8.71□□□□□ -1.02
VPS29-212ENST00000621131 LIN37Q96GY3 246 aaPredicted RBP8.71□□□□□ -1.02
VPS29-212ENST00000621131 NT5C1AQ9BXI3 368 aa8.71□□□□□ -1.02
VPS29-212ENST00000621131 BACH2Q9BYV9 841 aa8.71□□□□□ -1.02
VPS29-212ENST00000621131 GMIPQ9P107 970 aa8.71□□□□□ -1.02
VPS29-212ENST00000621131 DUSP13Q9UII6 198 aa8.71□□□□□ -1.02
VPS29-212ENST00000621131 TMEM59LQ9UK28 342 aa8.71□□□□□ -1.02
VPS29-212ENST00000621131 LRRC10BA6NIK2 292 aa8.7□□□□□ -1.02
VPS29-212ENST00000621131 MFAP1P55081 439 aaKnown RBP8.7□□□□□ -1.02
VPS29-212ENST00000621131 SEZ6Q53EL9 994 aa8.7□□□□□ -1.02
VPS29-212ENST00000621131 TMEM67Q5HYA8 995 aa8.7□□□□□ -1.02
VPS29-212ENST00000621131 CDCP2Q5VXM1 449 aa8.7□□□□□ -1.02
VPS29-212ENST00000621131 REXO1Q8N1G1 1221 aaKnown RBP8.7□□□□□ -1.02
VPS29-212ENST00000621131 EAF1Q96JC9 268 aaPredicted RBP8.7□□□□□ -1.02
VPS29-212ENST00000621131 SHISA3A0PJX4 238 aa8.69□□□□□ -1.02
VPS29-212ENST00000621131 ERVFC1P60507 584 aa8.69□□□□□ -1.02
VPS29-212ENST00000621131 EGR3Q06889 387 aa8.69□□□□□ -1.02
VPS29-212ENST00000621131 MLANAQ16655 118 aa8.69□□□□□ -1.02
VPS29-212ENST00000621131 SLITRK4Q8IW52 837 aa8.69□□□□□ -1.02
VPS29-212ENST00000621131 CNNM2Q9H8M5 875 aa8.69□□□□□ -1.02
VPS29-212ENST00000621131 SP110Q9HB58 689 aa8.69□□□□□ -1.02
VPS29-212ENST00000621131 CCDC180Q9P1Z9 1646 aa8.69□□□□□ -1.02
VPS29-212ENST00000621131 BTBD11A6QL63 1104 aa8.68□□□□□ -1.02
VPS29-212ENST00000621131 HPXP02790 462 aa8.68□□□□□ -1.02
VPS29-212ENST00000621131 RAG1P15918 1043 aa8.68□□□□□ -1.02
VPS29-212ENST00000621131 HK2P52789 917 aa8.68□□□□□ -1.02
VPS29-212ENST00000621131 APOBRQ0VD83 1088 aa8.68□□□□□ -1.02
VPS29-212ENST00000621131 OVOS1Q6IE37 1185 aa8.68□□□□□ -1.02
VPS29-212ENST00000621131 NKD1Q969G9 470 aa8.68□□□□□ -1.02
VPS29-212ENST00000621131 ATG4CQ96DT6 458 aa8.68□□□□□ -1.02
VPS29-212ENST00000621131 PCDHA11Q9Y5I1 949 aa8.68□□□□□ -1.02
VPS29-212ENST00000621131 FZD5Q13467 585 aa8.67□□□□□ -1.02
VPS29-212ENST00000621131 PRR23BQ6ZRT6 265 aa8.67□□□□□ -1.02
VPS29-212ENST00000621131 GK5Q6ZS86 529 aa8.67□□□□□ -1.02
VPS29-212ENST00000621131 ABHD4Q8TB40 342 aa8.67□□□□□ -1.02
VPS29-212ENST00000621131 FAM84AQ96KN4 292 aa8.67□□□□□ -1.02
VPS29-212ENST00000621131 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.67□□□□□ -1.02
VPS29-212ENST00000621131 ZGLP1P0C6A0 271 aa8.66□□□□□ -1.02
VPS29-212ENST00000621131 MCM4P33991 863 aa8.66□□□□□ -1.02
VPS29-212ENST00000621131 ZNF76P36508 570 aa8.66□□□□□ -1.02
VPS29-212ENST00000621131 ZNF165P49910 485 aa8.66□□□□□ -1.02
VPS29-212ENST00000621131 FANCCQ00597 558 aa8.66□□□□□ -1.02
VPS29-212ENST00000621131 ZNF124Q15973 351 aa8.66□□□□□ -1.02
VPS29-212ENST00000621131 NBPF12Q5TAG4 269 aaPredicted RBP8.66□□□□□ -1.02
VPS29-212ENST00000621131 ENOX1Q8TC92 643 aaKnown RBP8.66□□□□□ -1.02
VPS29-212ENST00000621131 SPON2Q9BUD6 331 aa8.66□□□□□ -1.02
VPS29-212ENST00000621131 ANTXR1Q9H6X2 564 aa8.66□□□□□ -1.02
VPS29-212ENST00000621131 ZNF281Q9Y2X9 895 aa8.66□□□□□ -1.02
VPS29-212ENST00000621131 KRTAP4-8A0A0G2JLE6 195 aa8.65□□□□□ -1.02
VPS29-212ENST00000621131 POLR2BP30876 1174 aaKnown RBP8.65□□□□□ -1.02
VPS29-212ENST00000621131 JAG1P78504 1218 aa8.65□□□□□ -1.02
VPS29-212ENST00000621131 NBPF9Q3BBW0 867 aa8.65□□□□□ -1.02
VPS29-212ENST00000621131 KIAA0825Q8IV33 1275 aa8.65□□□□□ -1.02
VPS29-212ENST00000621131 KSR1Q8IVT5 923 aa8.65□□□□□ -1.02
VPS29-212ENST00000621131 MYLIPQ8WY64 445 aa8.65□□□□□ -1.02
VPS29-212ENST00000621131 ARID1BQ8NFD5 2236 aaPredicted RBP8.64□□□□□ -1.03
VPS29-212ENST00000621131 RAC2P15153 192 aa8.64□□□□□ -1.03
VPS29-212ENST00000621131 LTKP29376 864 aa8.64□□□□□ -1.03
VPS29-212ENST00000621131 RNF4P78317 190 aa8.64□□□□□ -1.03
VPS29-212ENST00000621131 TEKQ02763 1124 aa8.64□□□□□ -1.03
VPS29-212ENST00000621131 MPZL3Q6UWV2 235 aa8.64□□□□□ -1.03
VPS29-212ENST00000621131 NLRC3Q7RTR2 1065 aa8.64□□□□□ -1.03
VPS29-212ENST00000621131 METTL5Q9NRN9 209 aaKnown RBP8.64□□□□□ -1.03
VPS29-212ENST00000621131 EBF1Q9UH73 591 aa8.64□□□□□ -1.03
VPS29-212ENST00000621131 MEIS3P2A8K0S8 358 aa8.63□□□□□ -1.03
VPS29-212ENST00000621131 NME1P15531 152 aaKnown RBP8.63□□□□□ -1.03
VPS29-212ENST00000621131 TRHRP34981 398 aaPredicted RBP8.63□□□□□ -1.03
VPS29-212ENST00000621131 CCNFP41002 786 aa8.63□□□□□ -1.03
VPS29-212ENST00000621131 CHMP4BP1P59074 171 aa8.63□□□□□ -1.03
VPS29-212ENST00000621131 NMIQ13287 307 aaPredicted RBP8.63□□□□□ -1.03
VPS29-212ENST00000621131 CLEC16AQ2KHT3 1053 aa8.63□□□□□ -1.03
VPS29-212ENST00000621131 LRRFIP1Q32MZ4 808 aaKnown RBP8.63□□□□□ -1.03
VPS29-212ENST00000621131 USHBP1Q8N6Y0 703 aa8.63□□□□□ -1.03
VPS29-212ENST00000621131 PDZD8Q8NEN9 1154 aa8.63□□□□□ -1.03
VPS29-212ENST00000621131 SYTL5Q8TDW5 730 aaPredicted RBP8.63□□□□□ -1.03
VPS29-212ENST00000621131 HDAC8Q9BY41 377 aa8.63□□□□□ -1.03
VPS29-212ENST00000621131 TNFRSF10CO14798 259 aa8.62□□□□□ -1.03
VPS29-212ENST00000621131 RAD51AP2Q09MP3 1159 aa8.62□□□□□ -1.03
VPS29-212ENST00000621131 USP48Q86UV5 1035 aa8.62□□□□□ -1.03
VPS29-212ENST00000621131 DAGLBQ8NCG7 672 aa8.62□□□□□ -1.03
VPS29-212ENST00000621131 BHLHE22Q8NFJ8 381 aaPredicted RBP8.62□□□□□ -1.03
VPS29-212ENST00000621131 SLC38A3Q99624 504 aa8.62□□□□□ -1.03
VPS29-212ENST00000621131 SNW1Q13573 536 aaKnown RBP8.61□□□□□ -1.03
VPS29-212ENST00000621131 ZNF394Q53GI3 561 aa8.61□□□□□ -1.03
VPS29-212ENST00000621131 TMC3Q7Z5M5 1100 aa8.61□□□□□ -1.03
VPS29-212ENST00000621131 TMEM192Q8IY95 271 aa8.61□□□□□ -1.03
VPS29-212ENST00000621131 DHX38Q92620 1227 aaKnown RBP8.61□□□□□ -1.03
VPS29-212ENST00000621131 ASCC2Q9H1I8 757 aaPredicted RBP8.61□□□□□ -1.03
VPS29-212ENST00000621131 C19orf44Q9H6X5 657 aa8.61□□□□□ -1.03
VPS29-212ENST00000621131 DBX1A6NMT0 343 aa8.6□□□□□ -1.03
VPS29-212ENST00000621131 RACK1P63244 317 aaKnown RBP8.6□□□□□ -1.03
VPS29-212ENST00000621131 NR0B2Q15466 257 aa8.6□□□□□ -1.03
VPS29-212ENST00000621131 HOMEZQ8IX15 550 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms