RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 GH2P01242 217 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 INF2Q27J81 1249 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 SBK1Q52WX2 424 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 FILIP1Q7Z7B0 1213 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 FCHSD1Q86WN1 690 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 COA7Q96BR5 231 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 CTAGE5O15320 804 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 TTLL1O95922 423 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 MMP1P03956 469 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 PPP4CP60510 307 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 SEPT2Q15019 361 aa17.95■□□□□ 0.46
CPSF1-213ENST00000620219 CCDC47Q96A33 483 aaKnown RBP17.95■□□□□ 0.46
CPSF1-213ENST00000620219 H7C1D1 291 aa17.94■□□□□ 0.46
CPSF1-213ENST00000620219 SLFN13Q68D06 897 aa17.94■□□□□ 0.46
CPSF1-213ENST00000620219 ATL3Q6DD88 541 aa17.94■□□□□ 0.46
CPSF1-213ENST00000620219 RASGRP2Q7LDG7 609 aa17.94■□□□□ 0.46
CPSF1-213ENST00000620219 SRBD1Q8N5C6 995 aaKnown RBP17.94■□□□□ 0.46
CPSF1-213ENST00000620219 TMEM87AQ8NBN3 555 aa17.94■□□□□ 0.46
CPSF1-213ENST00000620219 PRMT6Q96LA8 375 aaPredicted RBP17.94■□□□□ 0.46
CPSF1-213ENST00000620219 OSBPL5Q9H0X9 879 aaPredicted RBP17.94■□□□□ 0.46
CPSF1-213ENST00000620219 TACC3Q9Y6A5 838 aa17.94■□□□□ 0.46
CPSF1-213ENST00000620219 POLR2DO15514 142 aaKnown RBP17.94■□□□□ 0.46
CPSF1-213ENST00000620219 AGXT2Q9BYV1 514 aa17.94■□□□□ 0.46
CPSF1-213ENST00000620219 ZNF202O95125 648 aa17.94■□□□□ 0.46
CPSF1-213ENST00000620219 NRAPQ86VF7 1730 aa17.94■□□□□ 0.46
CPSF1-213ENST00000620219 CPXCR1Q8N123 301 aa17.94■□□□□ 0.46
CPSF1-213ENST00000620219 SERPINC1P01008 464 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 NDUFA8P51970 172 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 BLIDQ8IZY5 108 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 CLSTN2Q9H4D0 955 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 PCDHB6Q9Y5E3 794 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 PAPPAQ13219 1627 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 YEATS4O95619 227 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 KRT18P05783 430 aaKnown RBP17.93■□□□□ 0.46
CPSF1-213ENST00000620219 TNIP1Q15025 636 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 FAM43AQ8N2R8 423 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 LINC00301Q8NCQ3 95 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 TCP11L1Q9NUJ3 509 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 KCNH3Q9ULD8 1083 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 CCNT1O60563 726 aaKnown RBP17.93■□□□□ 0.46
CPSF1-213ENST00000620219 CUL5Q93034 780 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 KIFC2Q96AC6 838 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 ARHGEF10LQ9HCE6 1279 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 DDX4Q9NQI0 724 aaKnown RBP17.93■□□□□ 0.46
CPSF1-213ENST00000620219 ANAPC4Q9UJX5 808 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 ZNRF3Q9ULT6 936 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 CLEC11AQ9Y240 323 aa17.93■□□□□ 0.46
CPSF1-213ENST00000620219 CLSTN1O94985 981 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 CCDC174Q6PII3 467 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 NUP88Q99567 741 aaPredicted RBP17.92■□□□□ 0.46
CPSF1-213ENST00000620219 DHX36Q9H2U1 1008 aaKnown RBP17.92■□□□□ 0.46
CPSF1-213ENST00000620219 CCDC39Q9UFE4 941 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 SWAP70Q9UH65 585 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 TMEM232C9JQI7 657 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 STX1AQ16623 288 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 FAM205CA6NFA0 338 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 PFKFB1P16118 471 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 FAM200AQ8TCP9 573 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 GOLPH3LQ9H4A5 285 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 TTC12Q9H892 705 aaPredicted RBP17.92■□□□□ 0.46
CPSF1-213ENST00000620219 RCOR1Q9UKL0 485 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 PRPF3O43395 683 aaKnown RBP17.92■□□□□ 0.46
CPSF1-213ENST00000620219 ADALQ6DHV7 355 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 RTEL1Q9NZ71 1219 aa17.92■□□□□ 0.46
CPSF1-213ENST00000620219 WDR78Q5VTH9 848 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 ZFPM1Q8IX07 1006 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 CCDC17Q96LX7 622 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 MTFR1LQ9H019 292 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 LMOD1P29536 600 aaPredicted RBP17.91■□□□□ 0.46
CPSF1-213ENST00000620219 CDC25AP30304 524 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 GPR162Q16538 588 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 NEDD1Q8NHV4 660 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 ECM2O94769 699 aaPredicted RBP17.91■□□□□ 0.46
CPSF1-213ENST00000620219 TROAPQ12815 778 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 PPP4R3BQ5MIZ7 849 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 PRAMEF18Q5VWM3 479 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 HHIPL2Q6UWX4 724 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 CCDC84Q86UT8 332 aaPredicted RBP17.91■□□□□ 0.46
CPSF1-213ENST00000620219 CCDC43Q96MW1 224 aaKnown RBP17.91■□□□□ 0.46
CPSF1-213ENST00000620219 SUGT1Q9Y2Z0 365 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 ELP1O95163 1332 aa17.91■□□□□ 0.46
CPSF1-213ENST00000620219 MYH3P11055 1940 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 SMARCE1Q969G3 411 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 HOMER2Q9NSB8 354 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 MRVI1Q9Y6F6 885 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 DTHD1Q6ZMT9 781 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 REXO1Q8N1G1 1221 aaKnown RBP17.9■□□□□ 0.46
CPSF1-213ENST00000620219 AOPEPQ8N6M6 819 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 TXKP42681 527 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 RSBN1LQ6PCB5 846 aaPredicted RBP17.9■□□□□ 0.46
CPSF1-213ENST00000620219 TANGO6Q9C0B7 1094 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 KANSL2Q9H9L4 492 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 FAM205AQ6ZU69 1335 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 SALL1Q9NSC2 1324 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 IDEP14735 1019 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 PTGDRQ13258 359 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 SLC39A14Q15043 492 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 ZSCAN30Q86W11 494 aa17.9■□□□□ 0.46
CPSF1-213ENST00000620219 COL1A1P02452 1464 aaPredicted RBP17.9■□□□□ 0.46
CPSF1-213ENST00000620219 EEF2P13639 858 aaKnown RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms