RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 WDR78Q5VTH9 848 aa14.33□□□□□ -0.12
UPF3B-204ENST00000619445 TANGO6Q9C0B7 1094 aa14.33□□□□□ -0.12
UPF3B-204ENST00000619445 BCL11AQ9H165 835 aa14.33□□□□□ -0.12
UPF3B-204ENST00000619445 ECHDC1Q9NTX5 307 aa14.33□□□□□ -0.12
UPF3B-204ENST00000619445 RBM27Q9P2N5 1060 aaKnown RBP14.33□□□□□ -0.12
UPF3B-204ENST00000619445 ARPP21Q9UBL0 812 aaPredicted RBP14.33□□□□□ -0.12
UPF3B-204ENST00000619445 TMX2Q9Y320 296 aa14.33□□□□□ -0.12
UPF3B-204ENST00000619445 CNMDO75829 334 aa14.32□□□□□ -0.12
UPF3B-204ENST00000619445 ZFYP08048 801 aaPredicted RBP14.32□□□□□ -0.12
UPF3B-204ENST00000619445 ATP2B2Q01814 1243 aa14.32□□□□□ -0.12
UPF3B-204ENST00000619445 TRIM32Q13049 653 aa14.32□□□□□ -0.12
UPF3B-204ENST00000619445 GIMAP6Q6P9H5 292 aa14.32□□□□□ -0.12
UPF3B-204ENST00000619445 PRO3102Q9H379 93 aa14.32□□□□□ -0.12
UPF3B-204ENST00000619445 MROH8Q9H579 483 aa14.32□□□□□ -0.12
UPF3B-204ENST00000619445 KANSL2Q9H9L4 492 aa14.32□□□□□ -0.12
UPF3B-204ENST00000619445 ZNF236Q9UL36 1845 aa14.32□□□□□ -0.12
UPF3B-204ENST00000619445 RANBP2P49792 3224 aaKnown RBP14.32□□□□□ -0.12
UPF3B-204ENST00000619445 USP17L12C9JPN9 530 aa14.31□□□□□ -0.12
UPF3B-204ENST00000619445 USP17L21D6R901 530 aa14.31□□□□□ -0.12
UPF3B-204ENST00000619445 WDR46O15213 610 aaKnown RBP14.31□□□□□ -0.12
UPF3B-204ENST00000619445 C16orf86Q6ZW13 317 aa14.31□□□□□ -0.12
UPF3B-204ENST00000619445 ABRAQ8N0Z2 381 aa14.31□□□□□ -0.12
UPF3B-204ENST00000619445 VCPKMTQ9H867 229 aa14.31□□□□□ -0.12
UPF3B-204ENST00000619445 ZNF287Q9HBT7 754 aa14.31□□□□□ -0.12
UPF3B-204ENST00000619445 BTBD7Q9P203 1132 aa14.31□□□□□ -0.12
UPF3B-204ENST00000619445 SLC4A4Q9Y6R1 1079 aa14.31□□□□□ -0.12
UPF3B-204ENST00000619445 ALPK3Q96L96 1907 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 A0A1W2PRG0 241 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 PEX10O60683 326 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 FLOT1O75955 427 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 GNAT2P19087 354 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 BMP8BP34820 402 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 COPB2P35606 906 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 CDK8P49336 464 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 POTEEQ6S8J3 1075 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 DPP9Q86TI2 863 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 KBTBD3Q8NAB2 608 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 DIS3LQ8TF46 1054 aaKnown RBP14.3□□□□□ -0.12
UPF3B-204ENST00000619445 SPATC1LQ9H0A9 340 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 DCTPP1Q9H773 170 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 GOPCQ9HD26 462 aa14.3□□□□□ -0.12
UPF3B-204ENST00000619445 A0A0G2JMZ2 1700 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 PRKAB2O43741 272 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 SLC25A27O95847 323 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 CYP2D6P10635 497 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 DSG3P32926 999 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 CCL14Q16627 93 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 SBK1Q52WX2 424 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 OLFML2BQ68BL8 750 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 LHX8Q68G74 356 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 SLC44A5Q8NCS7 719 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 DYNLL2Q96FJ2 89 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 RLFQ13129 1914 aa14.29□□□□□ -0.12
UPF3B-204ENST00000619445 ERC2O15083 957 aa14.28□□□□□ -0.12
UPF3B-204ENST00000619445 AKR1B1P15121 316 aa14.28□□□□□ -0.12
UPF3B-204ENST00000619445 MNX1P50219 401 aaPredicted RBP14.28□□□□□ -0.12
UPF3B-204ENST00000619445 C7orf61Q8IZ16 206 aa14.28□□□□□ -0.12
UPF3B-204ENST00000619445 APPBP2Q92624 585 aa14.28□□□□□ -0.12
UPF3B-204ENST00000619445 MOV10L1Q9BXT6 1211 aaKnown RBP14.28□□□□□ -0.12
UPF3B-204ENST00000619445 DDX20Q9UHI6 824 aaKnown RBP14.28□□□□□ -0.12
UPF3B-204ENST00000619445 FRMPD3Q5JV73 1810 aa14.27□□□□□ -0.12
UPF3B-204ENST00000619445 COL6A1P12109 1028 aa14.27□□□□□ -0.12
UPF3B-204ENST00000619445 ERCC3P19447 782 aa14.27□□□□□ -0.12
UPF3B-204ENST00000619445 ADORA2AP29274 412 aa14.27□□□□□ -0.12
UPF3B-204ENST00000619445 CCND3P30281 292 aaPredicted RBP14.27□□□□□ -0.12
UPF3B-204ENST00000619445 C20orf194Q5TEA3 1177 aa14.27□□□□□ -0.12
UPF3B-204ENST00000619445 CTR9Q6PD62 1173 aa14.27□□□□□ -0.12
UPF3B-204ENST00000619445 STRBPQ96SI9 672 aaKnown RBP14.27□□□□□ -0.12
UPF3B-204ENST00000619445 PUS7LQ9H0K6 701 aaKnown RBP14.27□□□□□ -0.12
UPF3B-204ENST00000619445 TTC41PQ6P2S7 1318 aa14.27□□□□□ -0.13
UPF3B-204ENST00000619445 PARP14Q460N5 1801 aa14.27□□□□□ -0.13
UPF3B-204ENST00000619445 RNF113AO15541 343 aaKnown RBP14.26□□□□□ -0.13
UPF3B-204ENST00000619445 SMARCA5O60264 1052 aaPredicted RBP14.26□□□□□ -0.13
UPF3B-204ENST00000619445 FCER1AP12319 257 aa14.26□□□□□ -0.13
UPF3B-204ENST00000619445 PLS1Q14651 629 aa14.26□□□□□ -0.13
UPF3B-204ENST00000619445 ARRDC4Q8NCT1 418 aa14.26□□□□□ -0.13
UPF3B-204ENST00000619445 GDF15Q99988 308 aa14.26□□□□□ -0.13
UPF3B-204ENST00000619445 MKNK2Q9HBH9 465 aa14.26□□□□□ -0.13
UPF3B-204ENST00000619445 NRBP1Q9UHY1 535 aa14.26□□□□□ -0.13
UPF3B-204ENST00000619445 SYNPO2Q9UMS6 1093 aa14.26□□□□□ -0.13
UPF3B-204ENST00000619445 ROBO3Q96MS0 1386 aa14.26□□□□□ -0.13
UPF3B-204ENST00000619445 DNM1LO00429 736 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 EEF2P13639 858 aaKnown RBP14.25□□□□□ -0.13
UPF3B-204ENST00000619445 CNGA1P29973 690 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 EVX2Q03828 476 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 GPR153Q6NV75 609 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 NCAPG2Q86XI2 1143 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 SIAH1Q8IUQ4 282 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 SPICE1Q8N0Z3 855 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 ATG4CQ96DT6 458 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 NACAP1Q9BZK3 213 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 ZBTB47Q9UFB7 747 aaPredicted RBP14.25□□□□□ -0.13
UPF3B-204ENST00000619445 STAP2Q9UGK3 403 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 ADAMTS5Q9UNA0 930 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 PFASO15067 1338 aa14.25□□□□□ -0.13
UPF3B-204ENST00000619445 ZNFX1Q9P2E3 1918 aaKnown RBP14.25□□□□□ -0.13
UPF3B-204ENST00000619445 CYP2D7A0A087X1C5 515 aa14.24□□□□□ -0.13
UPF3B-204ENST00000619445 IGHA2P01877 340 aa14.24□□□□□ -0.13
UPF3B-204ENST00000619445 SLC3A2P08195 630 aaKnown RBP14.24□□□□□ -0.13
UPF3B-204ENST00000619445 CYBAP13498 195 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms