RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 NEMFO60524 1076 aa16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 XBP1P17861 261 aa16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 TCP10Q12799 353 aa16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 ALX1Q15699 326 aa16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 SRBD1Q8N5C6 995 aaKnown RBP16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 PPP1R13BQ96KQ4 1090 aa16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 CMA1P23946 247 aa16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 SMARCE1Q969G3 411 aa16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 LAMB4A4D0S4 1761 aa16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 E4F1Q66K89 784 aaPredicted RBP16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 FOXP4Q8IVH2 680 aaPredicted RBP16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 TEX11Q8IYF3 940 aa16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 WASF1Q92558 559 aa16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 MRFAP1L1Q96HT8 127 aa16.46■□□□□ 0.23
SHROOM1-208ENST00000617339 TM4SF1P30408 202 aa16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 COL1A1P02452 1464 aaPredicted RBP16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 TULP2O00295 520 aa16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 CARD6Q9BX69 1037 aa16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 FANCLQ9NW38 375 aa16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 ARGLU1Q9NWB6 273 aaPredicted RBP16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 NUP188Q5SRE5 1749 aa16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 SHANK3Q9BYB0 1731 aa16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 ERCC3P19447 782 aa16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 BTDP43251 543 aa16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 TXNRD1Q16881 649 aa16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 TMTC2Q8N394 836 aa16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 GGA1Q9UJY5 639 aa16.45■□□□□ 0.22
SHROOM1-208ENST00000617339 SFPQP23246 707 aaKnown RBP eCLIP16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 CDC25BP30305 580 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 RBM26Q5T8P6 1007 aaKnown RBP16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 USP17L2Q6R6M4 530 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 GPIHBP1Q8IV16 184 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 DOT1LQ8TEK3 1739 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 PNPLA7Q6ZV29 1317 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 TRIM75PA6NK02 468 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 H2AFXP16104 143 aaPredicted RBP16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 OAS2P29728 719 aaKnown RBP16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 ZNF804AQ7Z570 1209 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 DPF2Q92785 391 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 SHISA4Q96DD7 197 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 MMP10P09238 476 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 PNMA1Q8ND90 353 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 KCNQ5Q9NR82 932 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 FAM53CQ9NYF3 392 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 BCL9LQ86UU0 1499 aa16.44■□□□□ 0.22
SHROOM1-208ENST00000617339 RXRBP28702 533 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 PTPAQ15257 358 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 ZSWIM4Q9H7M6 989 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 LCMT1Q9UIC8 334 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 FRMPD2Q68DX3 1309 aaPredicted RBP16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 LRP6O75581 1613 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 UBR2Q8IWV8 1755 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 KRT2P35908 639 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 LMAN1P49257 510 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 TPM4P67936 248 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 GRAPQ13588 217 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 GRAPLQ8TC17 118 aaPredicted RBP16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 DBNDD1Q9H9R9 158 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 BAG3O95817 575 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 PTGDRQ13258 359 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 SEC23AQ15436 765 aa16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 METTL16Q86W50 562 aaKnown RBP16.43■□□□□ 0.22
SHROOM1-208ENST00000617339 ABCC6O95255 1503 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 GYS1P13807 737 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 UBASH3AP57075 661 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 TROAPQ12815 778 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 MAP3K14Q99558 947 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 BRMS1Q9HCU9 246 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 CD209Q9NNX6 404 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 POLLQ9UGP5 575 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 PP2D1A8MPX8 630 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 TMEM232C9JQI7 657 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 RBM43Q6ZSC3 357 aaKnown RBP16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 LRRC47Q8N1G4 583 aaKnown RBP16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 A0A1W2PQ27 194 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 A0A1W2PQ64 194 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 A0A1W2PQD8 194 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 EN1Q05925 392 aaPredicted RBP16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 ARMCX5Q6P1M9 558 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 KIAA0825Q8IV33 1275 aa16.42■□□□□ 0.22
SHROOM1-208ENST00000617339 IRX3P78415 501 aaPredicted RBP16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 SKIDA1Q1XH10 827 aa16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 DPP8Q6V1X1 898 aaPredicted RBP16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 RBM17Q96I25 401 aaKnown RBP16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 GPCPD1Q9NPB8 672 aa16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 SCAF8Q9UPN6 1271 aaKnown RBP16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 AKAP11Q9UKA4 1901 aa16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 PKN1Q16512 942 aa16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 ATL3Q6DD88 541 aa16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 SARM1Q6SZW1 724 aa16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 FNBP4Q8N3X1 1017 aaPredicted RBP16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 PCDHAC2Q9Y5I4 1007 aa16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 COL14A1Q05707 1796 aaKnown RBP16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 PLEKHG2Q9H7P9 1386 aa16.41■□□□□ 0.22
SHROOM1-208ENST00000617339 CNTNAP4Q9C0A0 1308 aa16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 NLRP12P59046 1061 aa16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 FANCCQ00597 558 aa16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 ZSCAN26Q16670 478 aa16.4■□□□□ 0.22
SHROOM1-208ENST00000617339 SYMPKQ92797 1274 aaKnown RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms