RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 RNF26Q9BY78 433 aaPredicted RBP16.58■□□□□ 0.25
USP39-220ENST00000613444 CLIP2Q9UDT6 1046 aa16.58■□□□□ 0.25
USP39-220ENST00000613444 ZC3H4Q9UPT8 1303 aaKnown RBP16.58■□□□□ 0.24
USP39-220ENST00000613444 KIF5BP33176 963 aa16.58■□□□□ 0.24
USP39-220ENST00000613444 FOSBP53539 338 aa16.58■□□□□ 0.24
USP39-220ENST00000613444 MIGA2Q7L4E1 593 aa16.58■□□□□ 0.24
USP39-220ENST00000613444 LRRC47Q8N1G4 583 aaKnown RBP16.58■□□□□ 0.24
USP39-220ENST00000613444 MKL1Q969V6 931 aa16.58■□□□□ 0.24
USP39-220ENST00000613444 ALG1Q9BT22 464 aa16.58■□□□□ 0.24
USP39-220ENST00000613444 KANSL2Q9H9L4 492 aa16.58■□□□□ 0.24
USP39-220ENST00000613444 GH2P01242 217 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 SNHG28P0DPA3 235 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 PKN1Q16512 942 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 OTUD7BQ6GQQ9 843 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 C8orf76Q96K31 380 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 ADARB2Q9NS39 739 aaKnown RBP16.57■□□□□ 0.24
USP39-220ENST00000613444 NYAP2Q9P242 653 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 PHF20L1A8MW92 1017 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 H3BQV1 296 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 PRPF3O43395 683 aaKnown RBP16.57■□□□□ 0.24
USP39-220ENST00000613444 PDHBP11177 359 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 GUCY1B3Q02153 619 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 RESTQ13127 1097 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 IFFO2Q5TF58 517 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 FERMT3Q86UX7 667 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 APOBEC3FQ8IUX4 373 aaKnown RBP16.57■□□□□ 0.24
USP39-220ENST00000613444 TRIM22Q8IYM9 498 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 GGA3Q9NZ52 723 aa16.57■□□□□ 0.24
USP39-220ENST00000613444 SCN4AP35499 1836 aa16.56■□□□□ 0.24
USP39-220ENST00000613444 DEXIO95424 95 aa16.56■□□□□ 0.24
USP39-220ENST00000613444 EEF2P13639 858 aaKnown RBP16.56■□□□□ 0.24
USP39-220ENST00000613444 NBR1Q14596 966 aa16.56■□□□□ 0.24
USP39-220ENST00000613444 PPP4R3BQ5MIZ7 849 aa16.56■□□□□ 0.24
USP39-220ENST00000613444 USP17L5A8MUK1 530 aa16.55■□□□□ 0.24
USP39-220ENST00000613444 CYTH3O43739 400 aa16.55■□□□□ 0.24
USP39-220ENST00000613444 LMOD1P29536 600 aaPredicted RBP16.55■□□□□ 0.24
USP39-220ENST00000613444 USP17L2Q6R6M4 530 aa16.55■□□□□ 0.24
USP39-220ENST00000613444 SHISA4Q96DD7 197 aa16.55■□□□□ 0.24
USP39-220ENST00000613444 ICA1Q05084 483 aa16.55■□□□□ 0.24
USP39-220ENST00000613444 FOXD4L6Q3SYB3 417 aaPredicted RBP16.55■□□□□ 0.24
USP39-220ENST00000613444 NBPF12Q5TAG4 269 aaPredicted RBP16.55■□□□□ 0.24
USP39-220ENST00000613444 DPY19L2Q6NUT2 758 aa16.55■□□□□ 0.24
USP39-220ENST00000613444 FOXD4L3Q6VB84 417 aaPredicted RBP16.55■□□□□ 0.24
USP39-220ENST00000613444 MTMR7Q9Y216 660 aa16.55■□□□□ 0.24
USP39-220ENST00000613444 V9GY48 417 aaPredicted RBP16.55■□□□□ 0.24
USP39-220ENST00000613444 PITPNM2Q9BZ72 1349 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 hCG_1642624A0A1W2PR95 340 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 GLTPD2A6NH11 291 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 GOLGA8HP0CJ92 632 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 CAP2P40123 477 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 GNAQP50148 359 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 WASF1Q92558 559 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 ZBTB21Q9ULJ3 1066 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 KLRF2D3W0D1 207 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 PARP1P09874 1014 aaKnown RBP16.54■□□□□ 0.24
USP39-220ENST00000613444 KRT40Q6A162 431 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 MCTP1Q6DN14 999 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 FAM173BQ6P4H8 233 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 CABP5Q9NP86 173 aa16.54■□□□□ 0.24
USP39-220ENST00000613444 SSC5DA1L4H1 1573 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 A0A1W2PRG0 241 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 ATP2B2Q01814 1243 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 ZSCAN16Q9H4T2 348 aaPredicted RBP16.53■□□□□ 0.24
USP39-220ENST00000613444 ATP6V1DQ9Y5K8 247 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 WDR90Q96KV7 1748 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 DOCK1Q14185 1865 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 VEGFAP15692 232 aaPredicted RBP16.53■□□□□ 0.24
USP39-220ENST00000613444 SMARCA1P28370 1054 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 DNM1Q05193 864 aaKnown RBP16.53■□□□□ 0.24
USP39-220ENST00000613444 PRAMEF18Q5VWM3 479 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 LZTS2Q9BRK4 669 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 SPZ1Q9BXG8 430 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 CPVLQ9H3G5 476 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 PPP2R3BQ9Y5P8 575 aa16.53■□□□□ 0.24
USP39-220ENST00000613444 DDX11L8A8MPP1 907 aa16.52■□□□□ 0.24
USP39-220ENST00000613444 ZNF543Q08ER8 600 aa16.52■□□□□ 0.24
USP39-220ENST00000613444 ASPRV1Q53RT3 343 aa16.52■□□□□ 0.24
USP39-220ENST00000613444 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.52■□□□□ 0.24
USP39-220ENST00000613444 POTECB2RU33 542 aa16.51■□□□□ 0.23
USP39-220ENST00000613444 KIF28PB7ZC32 967 aa16.51■□□□□ 0.23
USP39-220ENST00000613444 AKAP17AQ02040 695 aaKnown RBP16.51■□□□□ 0.23
USP39-220ENST00000613444 KIF23Q02241 960 aaPredicted RBP16.51■□□□□ 0.23
USP39-220ENST00000613444 PFKFB3Q16875 520 aaPredicted RBP16.51■□□□□ 0.23
USP39-220ENST00000613444 GMCL1P1Q8NEA9 526 aa16.51■□□□□ 0.23
USP39-220ENST00000613444 SYNPO2Q9UMS6 1093 aa16.51■□□□□ 0.23
USP39-220ENST00000613444 FRMPD2Q68DX3 1309 aaPredicted RBP16.51■□□□□ 0.23
USP39-220ENST00000613444 RIOX1Q9H6W3 641 aa16.51■□□□□ 0.23
USP39-220ENST00000613444 LMBRD1Q9NUN5 540 aa16.51■□□□□ 0.23
USP39-220ENST00000613444 ZNF112Q9UJU3 913 aa16.51■□□□□ 0.23
USP39-220ENST00000613444 CNPY2Q9Y2B0 182 aa16.51■□□□□ 0.23
USP39-220ENST00000613444 PAPPA2Q9BXP8 1791 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 SCG2P13521 617 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 ECE1P42892 770 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 USP50Q70EL3 339 aaPredicted RBP16.5■□□□□ 0.23
USP39-220ENST00000613444 ACER1Q8TDN7 264 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 RBM27Q9P2N5 1060 aaKnown RBP16.5■□□□□ 0.23
USP39-220ENST00000613444 KCNJ14Q9UNX9 436 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 PHIPQ8WWQ0 1821 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 F5H6K3 240 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 MMP1P03956 469 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms