RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 ECHDC1Q9NTX5 307 aa9.18□□□□□ -0.94
CUX1-219ENST00000606749 SLC4A4Q9Y6R1 1079 aa9.18□□□□□ -0.94
CUX1-219ENST00000606749 SLC15A5A6NIM6 579 aa9.17□□□□□ -0.94
CUX1-219ENST00000606749 GLRX3O76003 335 aaKnown RBP9.17□□□□□ -0.94
CUX1-219ENST00000606749 AKR1B1P15121 316 aa9.17□□□□□ -0.94
CUX1-219ENST00000606749 CCND3P30281 292 aaPredicted RBP9.17□□□□□ -0.94
CUX1-219ENST00000606749 WDR78Q5VTH9 848 aa9.17□□□□□ -0.94
CUX1-219ENST00000606749 LHX8Q68G74 356 aa9.17□□□□□ -0.94
CUX1-219ENST00000606749 C16orf86Q6ZW13 317 aa9.17□□□□□ -0.94
CUX1-219ENST00000606749 DDRGK1Q96HY6 314 aa9.17□□□□□ -0.94
CUX1-219ENST00000606749 STRBPQ96SI9 672 aaKnown RBP9.17□□□□□ -0.94
CUX1-219ENST00000606749 APBA2Q99767 749 aa9.17□□□□□ -0.94
CUX1-219ENST00000606749 NBPF3Q9H094 633 aa9.17□□□□□ -0.94
CUX1-219ENST00000606749 FLRT1Q9NZU1 646 aa9.17□□□□□ -0.94
CUX1-219ENST00000606749 TMX2Q9Y320 296 aa9.17□□□□□ -0.94
CUX1-219ENST00000606749 DDX60LQ5H9U9 1706 aaKnown RBP9.17□□□□□ -0.94
CUX1-219ENST00000606749 GSG1L2A8MUP6 293 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 STRNO43815 780 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 HOXC6P09630 235 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 DSG3P32926 999 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 ICA1Q05084 483 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 GRB14Q14449 540 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 CLEC10AQ8IUN9 316 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 AMOTL1Q8IY63 956 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 SPICE1Q8N0Z3 855 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 KBTBD3Q8NAB2 608 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 NPLOC4Q8TAT6 608 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 LPAR1Q92633 364 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 OSBP2Q969R2 916 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 MOV10L1Q9BXT6 1211 aaKnown RBP9.16□□□□□ -0.94
CUX1-219ENST00000606749 TANGO6Q9C0B7 1094 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 C11orf49Q9H6J7 331 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 KANSL2Q9H9L4 492 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 ARHGEF10LQ9HCE6 1279 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 IVNS1ABPQ9Y6Y0 642 aa9.16□□□□□ -0.94
CUX1-219ENST00000606749 NAV1Q8NEY1 1877 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 IGHA2P01877 340 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 EEF2P13639 858 aaKnown RBP9.15□□□□□ -0.94
CUX1-219ENST00000606749 ATP2B2Q01814 1243 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 SBK1Q52WX2 424 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 MFSD14CQ5VZR4 134 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 TSHZ3Q63HK5 1081 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 MB21D1Q8N884 522 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 GPATCH3Q96I76 525 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 SPATC1LQ9H0A9 340 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 VCPKMTQ9H867 229 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 STAP2Q9UGK3 403 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 PCDHB15Q9Y5E8 787 aa9.15□□□□□ -0.94
CUX1-219ENST00000606749 PFASO15067 1338 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 BAZ2AQ9UIF9 1905 aaKnown RBP9.14□□□□□ -0.95
CUX1-219ENST00000606749 WDR46O15213 610 aaKnown RBP9.14□□□□□ -0.95
CUX1-219ENST00000606749 RNF113AO15541 343 aaKnown RBP9.14□□□□□ -0.95
CUX1-219ENST00000606749 COBLO75128 1261 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 FLOT1O75955 427 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 COL6A1P12109 1028 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 ERCC3P19447 782 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 ADORA2AP29274 412 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 CYP2C19P33261 490 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 PLS1Q14651 629 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 GIMAP6Q6P9H5 292 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 DPP9Q86TI2 863 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 C7orf61Q8IZ16 206 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 SHCBP1Q8NEM2 672 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 APPBP2Q92624 585 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.14□□□□□ -0.95
CUX1-219ENST00000606749 SH2D4AQ9H788 454 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 ARPP21Q9UBL0 812 aaPredicted RBP9.14□□□□□ -0.95
CUX1-219ENST00000606749 ADAMTS5Q9UNA0 930 aa9.14□□□□□ -0.95
CUX1-219ENST00000606749 MINDY4BA8MYZ0 360 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 PATL2C9JE40 543 aaKnown RBP9.13□□□□□ -0.95
CUX1-219ENST00000606749 ZFYP08048 801 aaPredicted RBP9.13□□□□□ -0.95
CUX1-219ENST00000606749 RASA1P20936 1047 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 CNGA1P29973 690 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 BMP8BP34820 402 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 TMEM132BQ14DG7 1078 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 OLFML2BQ68BL8 750 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 SAMD1Q6SPF0 538 aaPredicted RBP9.13□□□□□ -0.95
CUX1-219ENST00000606749 NCAPG2Q86XI2 1143 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 ABRAQ8N0Z2 381 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 STK11IPQ8N1F8 1099 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 TRPV1Q8NER1 839 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 ATG4CQ96DT6 458 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 GDF15Q99988 308 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 MROH8Q9H579 483 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 MKNK2Q9HBH9 465 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 GOPCQ9HD26 462 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 DDX20Q9UHI6 824 aaKnown RBP9.13□□□□□ -0.95
CUX1-219ENST00000606749 ZMYND8Q9ULU4 1186 aaPredicted RBP9.13□□□□□ -0.95
CUX1-219ENST00000606749 RLFQ13129 1914 aa9.13□□□□□ -0.95
CUX1-219ENST00000606749 TTC41PQ6P2S7 1318 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 DNAH12Q6ZR08 3092 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 A0A1W2PPC1 479 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 M0R2C6 588 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 VWA5AO00534 786 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 GPAA1O43292 621 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 MSCO60682 206 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 SLC25A27O95847 323 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 CYBAP13498 195 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 SYN1P17600 705 aa9.12□□□□□ -0.95
CUX1-219ENST00000606749 GNAT2P19087 354 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms