RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 KIAA1683Q9H0B3 1180 aa11.82□□□□□ -0.52
UPF1-213ENST00000601981 ZCCHC17Q9NP64 241 aaKnown RBP11.82□□□□□ -0.52
UPF1-213ENST00000601981 TCP11L1Q9NUJ3 509 aa11.82□□□□□ -0.52
UPF1-213ENST00000601981 NYAP2Q9P242 653 aa11.82□□□□□ -0.52
UPF1-213ENST00000601981 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.82□□□□□ -0.52
UPF1-213ENST00000601981 PNMA3Q9UL41 463 aa11.82□□□□□ -0.52
UPF1-213ENST00000601981 STX8Q9UNK0 236 aa11.82□□□□□ -0.52
UPF1-213ENST00000601981 TESPA1A2RU30 521 aaPredicted RBP11.81□□□□□ -0.52
UPF1-213ENST00000601981 B4E1Z4 1266 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 CA12O43570 354 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 HMGB1P09429 215 aaKnown RBP11.81□□□□□ -0.52
UPF1-213ENST00000601981 EEF2P13639 858 aaKnown RBP11.81□□□□□ -0.52
UPF1-213ENST00000601981 GUCY1A2P33402 732 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 TM4SF4P48230 202 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 HMGCS2P54868 508 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 JAG1P78504 1218 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 SHROOM1Q2M3G4 852 aaPredicted RBP11.81□□□□□ -0.52
UPF1-213ENST00000601981 ADCK5Q3MIX3 580 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 SH3D19Q5HYK7 790 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 RUFY3Q7L099 469 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 SPRYD3Q8NCJ5 442 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 LPAR1Q92633 364 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 CEP95Q96GE4 821 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 TMX3Q96JJ7 454 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 MS4A4AQ96JQ5 239 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 ALDH8A1Q9H2A2 487 aaPredicted RBP11.81□□□□□ -0.52
UPF1-213ENST00000601981 CWC22Q9HCG8 908 aaKnown RBP11.81□□□□□ -0.52
UPF1-213ENST00000601981 MTMR4Q9NYA4 1195 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 CLIP2Q9UDT6 1046 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 TMX2Q9Y320 296 aa11.81□□□□□ -0.52
UPF1-213ENST00000601981 IGKV6D-41A0A0C4DH26 115 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 FOXN1O15353 648 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 RAD21O60216 631 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 MCM5P33992 734 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 ZYXQ15942 572 aaKnown RBP11.8□□□□□ -0.52
UPF1-213ENST00000601981 BLOC1S2Q6QNY1 142 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 ANKRD23Q86SG2 305 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 DGKHQ86XP1 1220 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 IFNL1Q8IU54 200 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 BRI3BPQ8WY22 251 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 INTS4Q96HW7 963 aaKnown RBP11.8□□□□□ -0.52
UPF1-213ENST00000601981 C12orf42Q96LP6 360 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 MTA3Q9BTC8 594 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 INCENPQ9NQS7 918 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 PRDM10Q9NQV6 1147 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 PDRG1Q9NUG6 133 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 AGTPBP1Q9UPW5 1226 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 SLC45A1Q9Y2W3 748 aa11.8□□□□□ -0.52
UPF1-213ENST00000601981 TOP1P11387 765 aaKnown RBP11.79□□□□□ -0.52
UPF1-213ENST00000601981 OSBPP22059 807 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 RPS6KB1P23443 525 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 AK2P54819 239 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 IRX3P78415 501 aaPredicted RBP11.79□□□□□ -0.52
UPF1-213ENST00000601981 CLEC10AQ8IUN9 316 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 ACER1Q8TDN7 264 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 MKL1Q969V6 931 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 NEK1Q96PY6 1258 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 ZSCAN10Q96SZ4 725 aaPredicted RBP11.79□□□□□ -0.52
UPF1-213ENST00000601981 PARK7Q99497 189 aaKnown RBP11.79□□□□□ -0.52
UPF1-213ENST00000601981 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.79□□□□□ -0.52
UPF1-213ENST00000601981 VCPKMTQ9H867 229 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 KAT14Q9H8E8 782 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 SAGE1Q9NXZ1 904 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 ZSWIM5Q9P217 1185 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 LIMCH1Q9UPQ0 1083 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 TACC3Q9Y6A5 838 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 TNKSO95271 1327 aa11.79□□□□□ -0.52
UPF1-213ENST00000601981 BTBD19C9JJ37 291 aa11.78□□□□□ -0.52
UPF1-213ENST00000601981 PDHXO00330 501 aa11.78□□□□□ -0.52
UPF1-213ENST00000601981 IFIT3O14879 490 aaKnown RBP11.78□□□□□ -0.52
UPF1-213ENST00000601981 WDR46O15213 610 aaKnown RBP11.78□□□□□ -0.52
UPF1-213ENST00000601981 CTCFP49711 727 aaPredicted RBP11.78□□□□□ -0.52
UPF1-213ENST00000601981 FGD1P98174 961 aa11.78□□□□□ -0.52
UPF1-213ENST00000601981 ANKRD1Q15327 319 aa11.78□□□□□ -0.52
UPF1-213ENST00000601981 TAF1CQ15572 869 aaPredicted RBP11.78□□□□□ -0.52
UPF1-213ENST00000601981 IFIT1BQ5T764 474 aaKnown RBP11.78□□□□□ -0.52
UPF1-213ENST00000601981 STOX1Q6ZVD7 989 aa11.78□□□□□ -0.52
UPF1-213ENST00000601981 GMCL1P1Q8NEA9 526 aa11.78□□□□□ -0.52
UPF1-213ENST00000601981 GTF3C2Q8WUA4 911 aaPredicted RBP11.78□□□□□ -0.52
UPF1-213ENST00000601981 TMEM87BQ96K49 555 aa11.78□□□□□ -0.52
UPF1-213ENST00000601981 ZSCAN31Q96LW9 406 aaPredicted RBP11.78□□□□□ -0.52
UPF1-213ENST00000601981 ZIC5Q96T25 663 aa11.78□□□□□ -0.52
UPF1-213ENST00000601981 ZFYVE28Q9HCC9 887 aa11.78□□□□□ -0.52
UPF1-213ENST00000601981 SH2B1Q9NRF2 756 aaPredicted RBP11.78□□□□□ -0.52
UPF1-213ENST00000601981 ISY1Q9ULR0 285 aaKnown RBP11.78□□□□□ -0.52
UPF1-213ENST00000601981 TAF6LQ9Y6J9 622 aa11.78□□□□□ -0.52
UPF1-213ENST00000601981 WDR19Q8NEZ3 1342 aa11.78□□□□□ -0.52
UPF1-213ENST00000601981 PARP14Q460N5 1801 aa11.77□□□□□ -0.52
UPF1-213ENST00000601981 A0A1W2PRG0 241 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 USP17L15C9J2P7 530 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 USP17L13C9JLJ4 530 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 USP17L11C9JVI0 530 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 USP17L18D6R9N7 530 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 USP17L22D6RA61 530 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 USP17L17D6RBQ6 530 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 USP17L19D6RCP7 530 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 USP17L20D6RJB6 530 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 IGF2BP3O00425 579 aaKnown RBP eCLIP11.77□□□□□ -0.53
UPF1-213ENST00000601981 PRC1O43663 620 aa11.77□□□□□ -0.53
UPF1-213ENST00000601981 NMT2O60551 498 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms