RNA–Protein interactions for RNA: ENST00000600970.5

USE1-208, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 5

Gene USE1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-208ENST00000600970 GABPAQ06546 454 aa20.4■□□□□ 0.86
USE1-208ENST00000600970 MAP3K12Q12852 859 aa20.4■□□□□ 0.86
USE1-208ENST00000600970 COG2Q14746 738 aa20.4■□□□□ 0.86
USE1-208ENST00000600970 C9orf50Q5SZB4 431 aa20.4■□□□□ 0.86
USE1-208ENST00000600970 CDX2Q99626 313 aaPredicted RBP20.4■□□□□ 0.86
USE1-208ENST00000600970 RIOK1Q9BRS2 568 aaKnown RBP20.4■□□□□ 0.86
USE1-208ENST00000600970 SPATC1LQ9H0A9 340 aa20.4■□□□□ 0.86
USE1-208ENST00000600970 HOXC10Q9NYD6 342 aa20.4■□□□□ 0.86
USE1-208ENST00000600970 SEPT4O43236 478 aa20.39■□□□□ 0.85
USE1-208ENST00000600970 COBLO75128 1261 aa20.39■□□□□ 0.85
USE1-208ENST00000600970 POLR3DP05423 398 aaPredicted RBP20.39■□□□□ 0.85
USE1-208ENST00000600970 TRIM60Q495X7 471 aa20.39■□□□□ 0.85
USE1-208ENST00000600970 SHCBP1Q8NEM2 672 aa20.39■□□□□ 0.85
USE1-208ENST00000600970 BADQ92934 168 aa20.39■□□□□ 0.85
USE1-208ENST00000600970 SEMA6BQ9H3T3 888 aa20.39■□□□□ 0.85
USE1-208ENST00000600970 PRDM5Q9NQX1 630 aaPredicted RBP20.39■□□□□ 0.85
USE1-208ENST00000600970 ERCC3P19447 782 aa20.38■□□□□ 0.85
USE1-208ENST00000600970 EVX2Q03828 476 aa20.38■□□□□ 0.85
USE1-208ENST00000600970 SNX17Q15036 470 aa20.38■□□□□ 0.85
USE1-208ENST00000600970 ZKSCAN2Q63HK3 967 aa20.38■□□□□ 0.85
USE1-208ENST00000600970 TMED8Q6PL24 325 aaPredicted RBP20.38■□□□□ 0.85
USE1-208ENST00000600970 TANGO6Q9C0B7 1094 aa20.38■□□□□ 0.85
USE1-208ENST00000600970 MYCNP04198 464 aaPredicted RBP20.37■□□□□ 0.85
USE1-208ENST00000600970 PRAMEF19Q5SWL8 479 aa20.37■□□□□ 0.85
USE1-208ENST00000600970 PDLIM7Q9NR12 457 aa20.37■□□□□ 0.85
USE1-208ENST00000600970 VCANP13611 3396 aa20.37■□□□□ 0.85
USE1-208ENST00000600970 ZNFX1Q9P2E3 1918 aaKnown RBP20.37■□□□□ 0.85
USE1-208ENST00000600970 PARP14Q460N5 1801 aa20.37■□□□□ 0.85
USE1-208ENST00000600970 MYH8P13535 1937 aa20.36■□□□□ 0.85
USE1-208ENST00000600970 MAGEB6P1A0A0J9YX57 407 aa20.36■□□□□ 0.85
USE1-208ENST00000600970 MPHOSPH10O00566 681 aaKnown RBP20.36■□□□□ 0.85
USE1-208ENST00000600970 ADCYAP1R1P41586 468 aa20.36■□□□□ 0.85
USE1-208ENST00000600970 LRRC41Q15345 812 aa20.36■□□□□ 0.85
USE1-208ENST00000600970 KIAA1755Q5JYT7 1200 aa20.36■□□□□ 0.85
USE1-208ENST00000600970 SH3RF1Q7Z6J0 888 aa20.36■□□□□ 0.85
USE1-208ENST00000600970 MAFAQ8NHW3 353 aaPredicted RBP20.36■□□□□ 0.85
USE1-208ENST00000600970 CUL9Q8IWT3 2517 aa20.35■□□□□ 0.85
USE1-208ENST00000600970 CDH23Q9H251 3354 aa20.35■□□□□ 0.85
USE1-208ENST00000600970 TRIM43BA6NCK2 446 aa20.35■□□□□ 0.85
USE1-208ENST00000600970 DSG3P32926 999 aa20.35■□□□□ 0.85
USE1-208ENST00000600970 SMAD3P84022 425 aaKnown RBP20.35■□□□□ 0.85
USE1-208ENST00000600970 MB21D1Q8N884 522 aa20.35■□□□□ 0.85
USE1-208ENST00000600970 FERMT2Q96AC1 680 aa20.35■□□□□ 0.85
USE1-208ENST00000600970 TRIM43Q96BQ3 446 aaPredicted RBP20.35■□□□□ 0.85
USE1-208ENST00000600970 TTYH1Q9H313 450 aaPredicted RBP20.35■□□□□ 0.85
USE1-208ENST00000600970 MCM9Q9NXL9 1143 aa20.35■□□□□ 0.85
USE1-208ENST00000600970 SLC5A4Q9NY91 659 aa20.35■□□□□ 0.85
USE1-208ENST00000600970 PLS1Q14651 629 aa20.34■□□□□ 0.85
USE1-208ENST00000600970 FAM47AQ5JRC9 791 aa20.34■□□□□ 0.85
USE1-208ENST00000600970 C1orf53Q5VUE5 145 aa20.34■□□□□ 0.85
USE1-208ENST00000600970 NCAPG2Q86XI2 1143 aa20.34■□□□□ 0.85
USE1-208ENST00000600970 ABRAQ8N0Z2 381 aa20.34■□□□□ 0.85
USE1-208ENST00000600970 MYLIPQ8WY64 445 aa20.34■□□□□ 0.85
USE1-208ENST00000600970 MAML3Q96JK9 1138 aa20.34■□□□□ 0.85
USE1-208ENST00000600970 CRNKL1Q9BZJ0 848 aaKnown RBP20.34■□□□□ 0.85
USE1-208ENST00000600970 MROH8Q9H579 483 aa20.34■□□□□ 0.85
USE1-208ENST00000600970 COL11A1P12107 1806 aaPredicted RBP20.34■□□□□ 0.85
USE1-208ENST00000600970 TMEM179Q6ZVK1 233 aa20.33■□□□□ 0.85
USE1-208ENST00000600970 AACSQ86V21 672 aa20.33■□□□□ 0.85
USE1-208ENST00000600970 ATG4CQ96DT6 458 aa20.33■□□□□ 0.85
USE1-208ENST00000600970 SMCHD1A6NHR9 2005 aa20.32■□□□□ 0.84
USE1-208ENST00000600970 FLOT1O75955 427 aa20.32■□□□□ 0.84
USE1-208ENST00000600970 PDE6AP16499 860 aa20.32■□□□□ 0.84
USE1-208ENST00000600970 TTF1Q15361 905 aaPredicted RBP20.32■□□□□ 0.84
USE1-208ENST00000600970 SLC9C2Q5TAH2 1124 aa20.32■□□□□ 0.84
USE1-208ENST00000600970 SIAH1Q8IUQ4 282 aa20.32■□□□□ 0.84
USE1-208ENST00000600970 ITPRIPQ8IWB1 547 aa20.32■□□□□ 0.84
USE1-208ENST00000600970 SLC44A5Q8NCS7 719 aa20.32■□□□□ 0.84
USE1-208ENST00000600970 SDR42E1Q8WUS8 393 aa20.32■□□□□ 0.84
USE1-208ENST00000600970 PLXNA1Q9UIW2 1896 aa20.32■□□□□ 0.84
USE1-208ENST00000600970 CYP2D6P10635 497 aa20.31■□□□□ 0.84
USE1-208ENST00000600970 FCER1AP12319 257 aa20.31■□□□□ 0.84
USE1-208ENST00000600970 ITGB8P26012 769 aa20.31■□□□□ 0.84
USE1-208ENST00000600970 TLE2Q04725 743 aa20.31■□□□□ 0.84
USE1-208ENST00000600970 DCP1AQ9NPI6 582 aaPredicted RBP20.31■□□□□ 0.84
USE1-208ENST00000600970 PHF24Q9UPV7 400 aa20.31■□□□□ 0.84
USE1-208ENST00000600970 EXOC6BQ9Y2D4 811 aa20.31■□□□□ 0.84
USE1-208ENST00000600970 PRUNE2Q8WUY3 3088 aa20.31■□□□□ 0.84
USE1-208ENST00000600970 SPTBN5Q9NRC6 3674 aaKnown RBP20.3■□□□□ 0.84
USE1-208ENST00000600970 RLBP1P12271 317 aa20.3■□□□□ 0.84
USE1-208ENST00000600970 TMEM132BQ14DG7 1078 aa20.3■□□□□ 0.84
USE1-208ENST00000600970 CEP85Q6P2H3 762 aa20.3■□□□□ 0.84
USE1-208ENST00000600970 ERC1Q8IUD2 1116 aa20.3■□□□□ 0.84
USE1-208ENST00000600970 CLEC10AQ8IUN9 316 aa20.3■□□□□ 0.84
USE1-208ENST00000600970 FTSJ3Q8IY81 847 aaKnown RBP20.3■□□□□ 0.84
USE1-208ENST00000600970 SPICE1Q8N0Z3 855 aa20.3■□□□□ 0.84
USE1-208ENST00000600970 ARHGEF10LQ9HCE6 1279 aa20.3■□□□□ 0.84
USE1-208ENST00000600970 XPNPEP3Q9NQH7 507 aa20.3■□□□□ 0.84
USE1-208ENST00000600970 SWAP70Q9UH65 585 aa20.3■□□□□ 0.84
USE1-208ENST00000600970 TMX2Q9Y320 296 aa20.3■□□□□ 0.84
USE1-208ENST00000600970 TACC3Q9Y6A5 838 aa20.3■□□□□ 0.84
USE1-208ENST00000600970 ZNF532Q9HCE3 1301 aa20.29■□□□□ 0.84
USE1-208ENST00000600970 TCRBV5S4A2TA0A5A2 114 aa20.29■□□□□ 0.84
USE1-208ENST00000600970 SLC25A27O95847 323 aa20.29■□□□□ 0.84
USE1-208ENST00000600970 AKR1B1P15121 316 aa20.29■□□□□ 0.84
USE1-208ENST00000600970 FOSL2P15408 326 aa20.29■□□□□ 0.84
USE1-208ENST00000600970 EPHB4P54760 987 aa20.29■□□□□ 0.84
USE1-208ENST00000600970 SAMD1Q6SPF0 538 aaPredicted RBP20.29■□□□□ 0.84
USE1-208ENST00000600970 LCORLQ8N3X6 602 aa20.29■□□□□ 0.84
USE1-208ENST00000600970 DYNLL2Q96FJ2 89 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms