RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 SPICE1Q8N0Z3 855 aa21.19■□□□□ 0.98
SHKBP1-223ENST00000600552 STK11IPQ8N1F8 1099 aa21.19■□□□□ 0.98
SHKBP1-223ENST00000600552 DDRGK1Q96HY6 314 aa21.19■□□□□ 0.98
SHKBP1-223ENST00000600552 OGDHLQ9ULD0 1010 aa21.19■□□□□ 0.98
SHKBP1-223ENST00000600552 ALPK3Q96L96 1907 aa21.19■□□□□ 0.98
SHKBP1-223ENST00000600552 DDX60LQ5H9U9 1706 aaKnown RBP21.18■□□□□ 0.98
SHKBP1-223ENST00000600552 USP17L12C9JPN9 530 aa21.18■□□□□ 0.98
SHKBP1-223ENST00000600552 USP17L21D6R901 530 aa21.18■□□□□ 0.98
SHKBP1-223ENST00000600552 RAD21O60216 631 aa21.18■□□□□ 0.98
SHKBP1-223ENST00000600552 PTPREP23469 700 aa21.18■□□□□ 0.98
SHKBP1-223ENST00000600552 COG2Q14746 738 aa21.18■□□□□ 0.98
SHKBP1-223ENST00000600552 MFSD14CQ5VZR4 134 aa21.18■□□□□ 0.98
SHKBP1-223ENST00000600552 TMEM179Q6ZVK1 233 aa21.18■□□□□ 0.98
SHKBP1-223ENST00000600552 FLRT1Q9NZU1 646 aa21.18■□□□□ 0.98
SHKBP1-223ENST00000600552 SWAP70Q9UH65 585 aa21.18■□□□□ 0.98
SHKBP1-223ENST00000600552 MYH8P13535 1937 aa21.17■□□□□ 0.98
SHKBP1-223ENST00000600552 SLC15A5A6NIM6 579 aa21.17■□□□□ 0.98
SHKBP1-223ENST00000600552 MNX1P50219 401 aaPredicted RBP21.17■□□□□ 0.98
SHKBP1-223ENST00000600552 KIAA1755Q5JYT7 1200 aa21.17■□□□□ 0.98
SHKBP1-223ENST00000600552 ARHGEF10LQ9HCE6 1279 aa21.17■□□□□ 0.98
SHKBP1-223ENST00000600552 ATP8A2Q9NTI2 1148 aa21.17■□□□□ 0.98
SHKBP1-223ENST00000600552 HOXC10Q9NYD6 342 aa21.17■□□□□ 0.98
SHKBP1-223ENST00000600552 CDK8P49336 464 aa21.16■□□□□ 0.98
SHKBP1-223ENST00000600552 ICA1Q05084 483 aa21.16■□□□□ 0.98
SHKBP1-223ENST00000600552 ZSCAN25Q6NSZ9 544 aa21.16■□□□□ 0.98
SHKBP1-223ENST00000600552 DPP9Q86TI2 863 aa21.16■□□□□ 0.98
SHKBP1-223ENST00000600552 NPLOC4Q8TAT6 608 aa21.16■□□□□ 0.98
SHKBP1-223ENST00000600552 FLOT1O75955 427 aa21.15■□□□□ 0.98
SHKBP1-223ENST00000600552 CYP2C19P33261 490 aa21.15■□□□□ 0.98
SHKBP1-223ENST00000600552 TSHZ3Q63HK5 1081 aa21.15■□□□□ 0.98
SHKBP1-223ENST00000600552 MOV10L1Q9BXT6 1211 aaKnown RBP21.15■□□□□ 0.98
SHKBP1-223ENST00000600552 PUS7LQ9H0K6 701 aaKnown RBP21.15■□□□□ 0.98
SHKBP1-223ENST00000600552 UBE3CQ15386 1083 aa21.14■□□□□ 0.97
SHKBP1-223ENST00000600552 C12orf60Q5U649 245 aa21.14■□□□□ 0.97
SHKBP1-223ENST00000600552 LHX8Q68G74 356 aa21.14■□□□□ 0.97
SHKBP1-223ENST00000600552 LBX2Q6XYB7 198 aa21.14■□□□□ 0.97
SHKBP1-223ENST00000600552 NCAPG2Q86XI2 1143 aa21.14■□□□□ 0.97
SHKBP1-223ENST00000600552 PRO3102Q9H379 93 aa21.14■□□□□ 0.97
SHKBP1-223ENST00000600552 MYH7P12883 1935 aa21.14■□□□□ 0.97
SHKBP1-223ENST00000600552 MYCNP04198 464 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-223ENST00000600552 ERCC3P19447 782 aa21.13■□□□□ 0.97
SHKBP1-223ENST00000600552 GRB14Q14449 540 aa21.13■□□□□ 0.97
SHKBP1-223ENST00000600552 SIAH1Q8IUQ4 282 aa21.13■□□□□ 0.97
SHKBP1-223ENST00000600552 ATG4CQ96DT6 458 aa21.13■□□□□ 0.97
SHKBP1-223ENST00000600552 SPATC1LQ9H0A9 340 aa21.13■□□□□ 0.97
SHKBP1-223ENST00000600552 SH2D4AQ9H788 454 aa21.13■□□□□ 0.97
SHKBP1-223ENST00000600552 ECHDC1Q9NTX5 307 aa21.13■□□□□ 0.97
SHKBP1-223ENST00000600552 PFASO15067 1338 aa21.12■□□□□ 0.97
SHKBP1-223ENST00000600552 EEF2P13639 858 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-223ENST00000600552 ADORA2AP29274 412 aa21.12■□□□□ 0.97
SHKBP1-223ENST00000600552 DSG3P32926 999 aa21.12■□□□□ 0.97
SHKBP1-223ENST00000600552 CTR9Q6PD62 1173 aa21.12■□□□□ 0.97
SHKBP1-223ENST00000600552 CCDC17Q96LX7 622 aa21.12■□□□□ 0.97
SHKBP1-223ENST00000600552 MINDY4BA8MYZ0 360 aa21.11■□□□□ 0.97
SHKBP1-223ENST00000600552 ANO1Q5XXA6 986 aa21.11■□□□□ 0.97
SHKBP1-223ENST00000600552 C16orf86Q6ZW13 317 aa21.11■□□□□ 0.97
SHKBP1-223ENST00000600552 GPATCH3Q96I76 525 aa21.11■□□□□ 0.97
SHKBP1-223ENST00000600552 SENP6Q9GZR1 1112 aaPredicted RBP21.11■□□□□ 0.97
SHKBP1-223ENST00000600552 VCPKMTQ9H867 229 aa21.11■□□□□ 0.97
SHKBP1-223ENST00000600552 TMX2Q9Y320 296 aa21.11■□□□□ 0.97
SHKBP1-223ENST00000600552 SOX1O00570 391 aaPredicted RBP21.1■□□□□ 0.97
SHKBP1-223ENST00000600552 MAGEA10P43363 369 aaPredicted RBP21.1■□□□□ 0.97
SHKBP1-223ENST00000600552 ATN1P54259 1190 aaPredicted RBP21.1■□□□□ 0.97
SHKBP1-223ENST00000600552 LRRC26Q2I0M4 334 aa21.1■□□□□ 0.97
SHKBP1-223ENST00000600552 LPAR1Q92633 364 aa21.1■□□□□ 0.97
SHKBP1-223ENST00000600552 LRCH3Q96II8 777 aa21.1■□□□□ 0.97
SHKBP1-223ENST00000600552 DDX20Q9UHI6 824 aaKnown RBP21.1■□□□□ 0.97
SHKBP1-223ENST00000600552 TRPV1Q8NER1 839 aa21.09■□□□□ 0.97
SHKBP1-223ENST00000600552 STRBPQ96SI9 672 aaKnown RBP21.09■□□□□ 0.97
SHKBP1-223ENST00000600552 MKNK2Q9HBH9 465 aa21.09■□□□□ 0.97
SHKBP1-223ENST00000600552 FBXO28Q9NVF7 368 aa21.09■□□□□ 0.97
SHKBP1-223ENST00000600552 WDR46O15213 610 aaKnown RBP21.08■□□□□ 0.97
SHKBP1-223ENST00000600552 STRNO43815 780 aa21.08■□□□□ 0.97
SHKBP1-223ENST00000600552 COBLO75128 1261 aa21.08■□□□□ 0.97
SHKBP1-223ENST00000600552 APPP05067 770 aa21.08■□□□□ 0.97
SHKBP1-223ENST00000600552 HOXC6P09630 235 aa21.08■□□□□ 0.97
SHKBP1-223ENST00000600552 SLC4A3P48751 1232 aa21.08■□□□□ 0.97
SHKBP1-223ENST00000600552 PRAMEF19Q5SWL8 479 aa21.08■□□□□ 0.97
SHKBP1-223ENST00000600552 MB21D1Q8N884 522 aa21.08■□□□□ 0.97
SHKBP1-223ENST00000600552 GDF15Q99988 308 aa21.08■□□□□ 0.97
SHKBP1-223ENST00000600552 DCTPP1Q9H773 170 aa21.08■□□□□ 0.97
SHKBP1-223ENST00000600552 KANSL2Q9H9L4 492 aa21.08■□□□□ 0.97
SHKBP1-223ENST00000600552 COL6A1P12109 1028 aa21.07■□□□□ 0.96
SHKBP1-223ENST00000600552 FAM83BQ5T0W9 1011 aa21.07■□□□□ 0.96
SHKBP1-223ENST00000600552 GJC2Q5T442 439 aaPredicted RBP21.07■□□□□ 0.96
SHKBP1-223ENST00000600552 SHCBP1Q8NEM2 672 aa21.07■□□□□ 0.96
SHKBP1-223ENST00000600552 UBE2OQ9C0C9 1292 aaKnown RBP21.07■□□□□ 0.96
SHKBP1-223ENST00000600552 MROH8Q9H579 483 aa21.07■□□□□ 0.96
SHKBP1-223ENST00000600552 GOPCQ9HD26 462 aa21.07■□□□□ 0.96
SHKBP1-223ENST00000600552 SLC5A4Q9NY91 659 aa21.07■□□□□ 0.96
SHKBP1-223ENST00000600552 ARPP21Q9UBL0 812 aaPredicted RBP21.07■□□□□ 0.96
SHKBP1-223ENST00000600552 RLFQ13129 1914 aa21.06■□□□□ 0.96
SHKBP1-223ENST00000600552 A0A1W2PPC1 479 aa21.06■□□□□ 0.96
SHKBP1-223ENST00000600552 RNF113AO15541 343 aaKnown RBP21.06■□□□□ 0.96
SHKBP1-223ENST00000600552 MDM2Q00987 491 aaPredicted RBP21.06■□□□□ 0.96
SHKBP1-223ENST00000600552 TMEM132BQ14DG7 1078 aa21.06■□□□□ 0.96
SHKBP1-223ENST00000600552 KBTBD3Q8NAB2 608 aa21.06■□□□□ 0.96
SHKBP1-223ENST00000600552 OSBP2Q969R2 916 aa21.06■□□□□ 0.96
SHKBP1-223ENST00000600552 NUP88Q99567 741 aaPredicted RBP21.06■□□□□ 0.96
SHKBP1-223ENST00000600552 GSG1L2A8MUP6 293 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms