RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 PDE6AP16499 860 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 RGS2P41220 211 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 MNX1P50219 401 aaPredicted RBP15.09■□□□□ 0.01
UPF1-208ENST00000600012 USP14P54578 494 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 MAP3K12Q12852 859 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 LRRFIP1Q32MZ4 808 aaKnown RBP15.09■□□□□ 0.01
UPF1-208ENST00000600012 Q3C1V9 767 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 ZMYM1Q5SVZ6 1142 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 GPR142Q7Z601 462 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 TTC6Q86TZ1 520 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 ZNF589Q86UQ0 364 aaPredicted RBP15.09■□□□□ 0.01
UPF1-208ENST00000600012 USP6NLQ92738 828 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 APBA2Q99767 749 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 C22orf23Q9BZE7 217 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 PORCNQ9H237 461 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 C11orf49Q9H6J7 331 aa15.09■□□□□ 0.01
UPF1-208ENST00000600012 FRMPD3Q5JV73 1810 aa15.08■□□□□ 0.01
UPF1-208ENST00000600012 USP17L15C9J2P7 530 aa15.08■□□□□ 0
UPF1-208ENST00000600012 USP17L13C9JLJ4 530 aa15.08■□□□□ 0
UPF1-208ENST00000600012 USP17L11C9JVI0 530 aa15.08■□□□□ 0
UPF1-208ENST00000600012 USP17L18D6R9N7 530 aa15.08■□□□□ 0
UPF1-208ENST00000600012 USP17L22D6RA61 530 aa15.08■□□□□ 0
UPF1-208ENST00000600012 USP17L17D6RBQ6 530 aa15.08■□□□□ 0
UPF1-208ENST00000600012 USP17L19D6RCP7 530 aa15.08■□□□□ 0
UPF1-208ENST00000600012 USP17L20D6RJB6 530 aa15.08■□□□□ 0
UPF1-208ENST00000600012 M0R2C6 588 aa15.08■□□□□ 0
UPF1-208ENST00000600012 EIF5BO60841 1220 aaKnown RBP15.08■□□□□ 0
UPF1-208ENST00000600012 BMP8BP34820 402 aa15.08■□□□□ 0
UPF1-208ENST00000600012 CCNA1P78396 465 aa15.08■□□□□ 0
UPF1-208ENST00000600012 USP17L24Q0WX57 530 aa15.08■□□□□ 0
UPF1-208ENST00000600012 MORN1Q5T089 497 aa15.08■□□□□ 0
UPF1-208ENST00000600012 SLC9C2Q5TAH2 1124 aa15.08■□□□□ 0
UPF1-208ENST00000600012 ZSCAN25Q6NSZ9 544 aa15.08■□□□□ 0
UPF1-208ENST00000600012 PLEKHH3Q7Z736 793 aa15.08■□□□□ 0
UPF1-208ENST00000600012 APPBP2Q92624 585 aa15.08■□□□□ 0
UPF1-208ENST00000600012 TBC1D32Q96NH3 1257 aa15.08■□□□□ 0
UPF1-208ENST00000600012 GDF15Q99988 308 aa15.08■□□□□ 0
UPF1-208ENST00000600012 KIAA1683Q9H0B3 1180 aa15.08■□□□□ 0
UPF1-208ENST00000600012 CWC22Q9HCG8 908 aaKnown RBP15.08■□□□□ 0
UPF1-208ENST00000600012 RABGAP1Q9Y3P9 1069 aa15.08■□□□□ 0
UPF1-208ENST00000600012 ZNF532Q9HCE3 1301 aa15.08■□□□□ 0
UPF1-208ENST00000600012 TCRBV5S4A2TA0A5A2 114 aa15.07■□□□□ 0
UPF1-208ENST00000600012 CACNB2Q08289 660 aaPredicted RBP15.07■□□□□ 0
UPF1-208ENST00000600012 RAB3GAP1Q15042 981 aa15.07■□□□□ 0
UPF1-208ENST00000600012 ZYXQ15942 572 aaKnown RBP15.07■□□□□ 0
UPF1-208ENST00000600012 ABCB5Q2M3G0 1257 aa15.07■□□□□ 0
UPF1-208ENST00000600012 CERKLQ49MI3 558 aaPredicted RBP15.07■□□□□ 0
UPF1-208ENST00000600012 MCMDC2Q4G0Z9 681 aa15.07■□□□□ 0
UPF1-208ENST00000600012 POTEEQ6S8J3 1075 aa15.07■□□□□ 0
UPF1-208ENST00000600012 TICAM2Q86XR7 235 aa15.07■□□□□ 0
UPF1-208ENST00000600012 OSBP2Q969R2 916 aa15.07■□□□□ 0
UPF1-208ENST00000600012 USP26Q9BXU7 913 aa15.07■□□□□ 0
UPF1-208ENST00000600012 LSG1Q9H089 658 aaKnown RBP15.07■□□□□ 0
UPF1-208ENST00000600012 CABP5Q9NP86 173 aa15.07■□□□□ 0
UPF1-208ENST00000600012 HELLSQ9NRZ9 838 aa15.07■□□□□ 0
UPF1-208ENST00000600012 ZMYND8Q9ULU4 1186 aaPredicted RBP15.07■□□□□ 0
UPF1-208ENST00000600012 CCDC171Q6TFL3 1326 aa15.07■□□□□ 0
UPF1-208ENST00000600012 LAMA4Q16363 1823 aa15.06■□□□□ 0
UPF1-208ENST00000600012 SOX1O00570 391 aaPredicted RBP15.06■□□□□ 0
UPF1-208ENST00000600012 PTH1RQ03431 593 aa15.06■□□□□ 0
UPF1-208ENST00000600012 MAP2K5Q13163 448 aa15.06■□□□□ 0
UPF1-208ENST00000600012 KIAA1211Q6ZU35 1233 aa15.06■□□□□ 0
UPF1-208ENST00000600012 PFASO15067 1338 aa15.06■□□□□ 0
UPF1-208ENST00000600012 MYH8P13535 1937 aa15.05■□□□□ 0
UPF1-208ENST00000600012 VCAM1P19320 739 aa15.05■□□□□ -0
UPF1-208ENST00000600012 CCND3P30281 292 aaPredicted RBP15.05■□□□□ -0
UPF1-208ENST00000600012 UBE3CQ15386 1083 aa15.05■□□□□ -0
UPF1-208ENST00000600012 CCL14Q16627 93 aa15.05■□□□□ -0
UPF1-208ENST00000600012 LBX2Q6XYB7 198 aa15.05■□□□□ -0
UPF1-208ENST00000600012 CATSPERGQ6ZRH7 1159 aa15.05■□□□□ -0
UPF1-208ENST00000600012 LRCH3Q96II8 777 aa15.05■□□□□ -0
UPF1-208ENST00000600012 RIOK1Q9BRS2 568 aaKnown RBP15.05■□□□□ -0
UPF1-208ENST00000600012 PUS7LQ9H0K6 701 aaKnown RBP15.05■□□□□ -0
UPF1-208ENST00000600012 BAZ2AQ9UIF9 1905 aaKnown RBP15.04■□□□□ -0
UPF1-208ENST00000600012 MAGEB6P1A0A0J9YX57 407 aa15.04■□□□□ -0
UPF1-208ENST00000600012 SLC15A5A6NIM6 579 aa15.04■□□□□ -0
UPF1-208ENST00000600012 CNMDO75829 334 aa15.04■□□□□ -0
UPF1-208ENST00000600012 COL6A1P12109 1028 aa15.04■□□□□ -0
UPF1-208ENST00000600012 SYN1P17600 705 aa15.04■□□□□ -0
UPF1-208ENST00000600012 SHMT1P34896 483 aa15.04■□□□□ -0
UPF1-208ENST00000600012 RBM25P49756 843 aaKnown RBP15.04■□□□□ -0
UPF1-208ENST00000600012 ACER1Q8TDN7 264 aa15.04■□□□□ -0
UPF1-208ENST00000600012 CRNKL1Q9BZJ0 848 aaKnown RBP15.04■□□□□ -0
UPF1-208ENST00000600012 GPAA1O43292 621 aa15.03■□□□□ -0
UPF1-208ENST00000600012 POLR3DP05423 398 aaPredicted RBP15.03■□□□□ -0
UPF1-208ENST00000600012 PTPREP23469 700 aa15.03■□□□□ -0
UPF1-208ENST00000600012 MAGEA10P43363 369 aaPredicted RBP15.03■□□□□ -0
UPF1-208ENST00000600012 PLCD1P51178 756 aa15.03■□□□□ -0
UPF1-208ENST00000600012 VPS53Q5VIR6 699 aa15.03■□□□□ -0
UPF1-208ENST00000600012 WDR78Q5VTH9 848 aa15.03■□□□□ -0
UPF1-208ENST00000600012 MFSD14CQ5VZR4 134 aa15.03■□□□□ -0
UPF1-208ENST00000600012 LHX8Q68G74 356 aa15.03■□□□□ -0
UPF1-208ENST00000600012 GPR153Q6NV75 609 aa15.03■□□□□ -0
UPF1-208ENST00000600012 IVNS1ABPQ9Y6Y0 642 aa15.03■□□□□ -0
UPF1-208ENST00000600012 ZNF236Q9UL36 1845 aa15.03■□□□□ -0
UPF1-208ENST00000600012 LAMA3Q16787 3333 aa15.02■□□□□ -0
UPF1-208ENST00000600012 SPDYE16A6NNV3 312 aaPredicted RBP15.02■□□□□ -0
UPF1-208ENST00000600012 MBD4O95243 580 aa15.02■□□□□ -0
UPF1-208ENST00000600012 HOXC6P09630 235 aa15.02■□□□□ -0
UPF1-208ENST00000600012 GUCY1A2P33402 732 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms