RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 ECM2O94769 699 aaPredicted RBP11.56□□□□□ -0.56
VRK3-215ENST00000599138 FGRP09769 529 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 HSPD1P10809 573 aaKnown RBP11.56□□□□□ -0.56
VRK3-215ENST00000599138 SOX10P56693 466 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 IRF5Q13568 498 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 Q3C1V9 767 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 SLC9C1Q4G0N8 1177 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 GPRC5AQ8NFJ5 357 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 NYAP2Q9P242 653 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 GJD2Q9UKL4 321 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 GABRQQ9UN88 632 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.56□□□□□ -0.56
VRK3-215ENST00000599138 RABGAP1Q9Y3P9 1069 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 TACC3Q9Y6A5 838 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 ZMYM6O95789 1325 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 CCDC171Q6TFL3 1326 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 PLXNB2O15031 1838 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 PARP14Q460N5 1801 aa11.56□□□□□ -0.56
VRK3-215ENST00000599138 MYH4Q9Y623 1939 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 SPDYE16A6NNV3 312 aaPredicted RBP11.55□□□□□ -0.56
VRK3-215ENST00000599138 PRDM1O75626 825 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 FGAP02671 866 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 SLC3A2P08195 630 aaKnown RBP11.55□□□□□ -0.56
VRK3-215ENST00000599138 GSPT1P15170 499 aaKnown RBP11.55□□□□□ -0.56
VRK3-215ENST00000599138 FLT3LGP49771 235 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 ERVK-9P63128 1117 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 ERVK-24P63145 666 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 PDE4BQ07343 736 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 TTC22Q5TAA0 569 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 NBPF11Q86T75 865 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 ZNF444Q8N0Y2 327 aaPredicted RBP11.55□□□□□ -0.56
VRK3-215ENST00000599138 STK11IPQ8N1F8 1099 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 NEDD1Q8NHV4 660 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 RAET1EQ8TD07 263 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 MKL1Q969V6 931 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 COA7Q96BR5 231 aa11.55□□□□□ -0.56
VRK3-215ENST00000599138 HIP1O00291 1037 aa11.54□□□□□ -0.56
VRK3-215ENST00000599138 WDR46O15213 610 aaKnown RBP11.54□□□□□ -0.56
VRK3-215ENST00000599138 GRK4P32298 578 aa11.54□□□□□ -0.56
VRK3-215ENST00000599138 COG2Q14746 738 aa11.54□□□□□ -0.56
VRK3-215ENST00000599138 SPICE1Q8N0Z3 855 aa11.54□□□□□ -0.56
VRK3-215ENST00000599138 PXYLP1Q8TE99 480 aa11.54□□□□□ -0.56
VRK3-215ENST00000599138 SH3TC2Q8TF17 1288 aa11.54□□□□□ -0.56
VRK3-215ENST00000599138 MTMR4Q9NYA4 1195 aa11.54□□□□□ -0.56
VRK3-215ENST00000599138 HOXC10Q9NYD6 342 aa11.54□□□□□ -0.56
VRK3-215ENST00000599138 SYNPO2Q9UMS6 1093 aa11.54□□□□□ -0.56
VRK3-215ENST00000599138 A0A0G2JMZ2 1700 aa11.54□□□□□ -0.56
VRK3-215ENST00000599138 ORC4O43929 436 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 MAPK4P31152 587 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 DSG3P32926 999 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 MFAP1P55081 439 aaKnown RBP11.53□□□□□ -0.56
VRK3-215ENST00000599138 CTDSPL2Q05D32 466 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 CWC27Q6UX04 472 aaKnown RBP11.53□□□□□ -0.56
VRK3-215ENST00000599138 SLAIN1Q8ND83 568 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 USP6NLQ92738 828 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 CEP95Q96GE4 821 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 PAGR1Q9BTK6 254 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 TANGO6Q9C0B7 1094 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 PORCNQ9H237 461 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 GOPCQ9HD26 462 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 INCENPQ9NQS7 918 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 DIAPH3Q9NSV4 1193 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 BTBD7Q9P203 1132 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 ADAMTS5Q9UNA0 930 aa11.53□□□□□ -0.56
VRK3-215ENST00000599138 TNRC18O15417 2968 aaPredicted RBP11.52□□□□□ -0.56
VRK3-215ENST00000599138 MKI67P46013 3256 aaKnown RBP11.52□□□□□ -0.56
VRK3-215ENST00000599138 POTEFA5A3E0 1075 aa11.52□□□□□ -0.57
VRK3-215ENST00000599138 ADCY3O60266 1144 aa11.52□□□□□ -0.57
VRK3-215ENST00000599138 TTLL1O95922 423 aa11.52□□□□□ -0.57
VRK3-215ENST00000599138 NOVP48745 357 aa11.52□□□□□ -0.57
VRK3-215ENST00000599138 TFAP4Q01664 338 aa11.52□□□□□ -0.57
VRK3-215ENST00000599138 ATP2B2Q01814 1243 aa11.52□□□□□ -0.57
VRK3-215ENST00000599138 MLLT1Q03111 559 aaPredicted RBP11.52□□□□□ -0.57
VRK3-215ENST00000599138 FAM47AQ5JRC9 791 aa11.52□□□□□ -0.57
VRK3-215ENST00000599138 MB21D1Q8N884 522 aa11.52□□□□□ -0.57
VRK3-215ENST00000599138 NBPF3Q9H094 633 aa11.52□□□□□ -0.57
VRK3-215ENST00000599138 F5H6K3 240 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 FLOT1O75955 427 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 NDUFB10O96000 172 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 TSPY3P0CV98 308 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 TSPY8P0CW00 308 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 XRCC5P13010 732 aaKnown RBP11.51□□□□□ -0.57
VRK3-215ENST00000599138 ELNP15502 786 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 CCNA1P78396 465 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 KLRC3Q07444 240 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 MTFR1Q15390 333 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 MORN1Q5T089 497 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 GPR142Q7Z601 462 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 PLEKHH3Q7Z736 793 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 GMCL1P1Q8NEA9 526 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 SOCS4Q8WXH5 440 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 ATG4CQ96DT6 458 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 DSCC1Q9BVC3 393 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 IL25Q9H293 177 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 IL17RBQ9NRM6 502 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 CLIP2Q9UDT6 1046 aa11.51□□□□□ -0.57
VRK3-215ENST00000599138 COL11A1P12107 1806 aaPredicted RBP11.51□□□□□ -0.57
VRK3-215ENST00000599138 PCP11498 1178 aaKnown RBP11.5□□□□□ -0.57
VRK3-215ENST00000599138 PPP4R3BQ5MIZ7 849 aa11.5□□□□□ -0.57
VRK3-215ENST00000599138 FAM83BQ5T0W9 1011 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms