RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 FAM13AO94988 1023 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 STK24Q9Y6E0 443 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 PNPLA7Q6ZV29 1317 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 STAT2P52630 851 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 GALNT17Q6IS24 598 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 KCTD1Q719H9 257 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 DHX58Q96C10 678 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 FHDC1Q9C0D6 1143 aaPredicted RBP11.13□□□□□ -0.63
LIG3-216ENST00000593099 DEF6Q9H4E7 631 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 POLLQ9UGP5 575 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 SYCE3A1L190 88 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 VWA3AA6NCI4 1184 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 BIN1O00499 593 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 JAK2O60674 1132 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 ENTPD3O75355 529 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 SLIT2O94813 1529 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 FOSP01100 380 aaPredicted RBP11.13□□□□□ -0.63
LIG3-216ENST00000593099 HOXA10P31260 410 aaPredicted RBP11.13□□□□□ -0.63
LIG3-216ENST00000593099 ALX1Q15699 326 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 ME3Q16798 604 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 APOA5Q6Q788 366 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 CMTR1Q8N1G2 835 aaKnown RBP11.13□□□□□ -0.63
LIG3-216ENST00000593099 IQUBQ8NA54 791 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 GGA3Q9NZ52 723 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 ZSWIM5Q9P217 1185 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 SERPINA10Q9UK55 444 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 PIK3C2AO00443 1686 aa11.13□□□□□ -0.63
LIG3-216ENST00000593099 CCT6AP40227 531 aaKnown RBP11.12□□□□□ -0.63
LIG3-216ENST00000593099 HDLBPQ00341 1268 aaKnown RBP11.12□□□□□ -0.63
LIG3-216ENST00000593099 CCDC40Q4G0X9 1142 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 ANGEL2Q5VTE6 544 aaKnown RBP11.12□□□□□ -0.63
LIG3-216ENST00000593099 TXKP42681 527 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 FAM193AP78312 1265 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 BLIDQ8IZY5 108 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 MYOZ2Q9NPC6 264 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 ZNF70Q9UC06 446 aaPredicted RBP11.12□□□□□ -0.63
LIG3-216ENST00000593099 FAM196BA6NMK8 535 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 PLCD1P51178 756 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 SYDE2Q5VT97 1194 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 TCERG1LQ5VWI1 586 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 ONECUT3O60422 494 aaPredicted RBP11.12□□□□□ -0.63
LIG3-216ENST00000593099 PDIA3P30101 505 aaKnown RBP11.12□□□□□ -0.63
LIG3-216ENST00000593099 SLFNL1Q499Z3 407 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 USP37Q86T82 979 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 STAG1Q8WVM7 1258 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 ADD3Q9UEY8 706 aaKnown RBP11.12□□□□□ -0.63
LIG3-216ENST00000593099 MON2Q7Z3U7 1717 aa11.12□□□□□ -0.63
LIG3-216ENST00000593099 MYOM1P52179 1685 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 TESPA1A2RU30 521 aaPredicted RBP11.11□□□□□ -0.63
LIG3-216ENST00000593099 PDE4DQ08499 809 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 SPP2Q13103 211 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 ADCK5Q3MIX3 580 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 ANO1Q5XXA6 986 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 CCDC70Q6NSX1 233 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 MXD3Q9BW11 206 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 USP17L10C9JJH3 530 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 POTEJP0CG39 1038 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 LIFRP42702 1097 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 MMP14P50281 582 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 SEPT2Q15019 361 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 PLCD3Q8N3E9 789 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 GTPBP4Q9BZE4 634 aaKnown RBP11.11□□□□□ -0.63
LIG3-216ENST00000593099 CLGNO14967 610 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 CNGA1P29973 690 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 MTIF2P46199 727 aaKnown RBP11.11□□□□□ -0.63
LIG3-216ENST00000593099 KAZALD1Q96I82 304 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 MLXIPQ9HAP2 919 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 ATRNO75882 1429 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 BCL9LQ86UU0 1499 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 DDX39AO00148 427 aaKnown RBP11.11□□□□□ -0.63
LIG3-216ENST00000593099 TM4SF1P30408 202 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 CALCRLQ16602 461 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 NCAPH2Q6IBW4 605 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 FAM114A1Q8IWE2 563 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 CCAR2Q8N163 923 aaKnown RBP11.11□□□□□ -0.63
LIG3-216ENST00000593099 FAM151AQ8WW52 585 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 RNF26Q9BY78 433 aaPredicted RBP11.11□□□□□ -0.63
LIG3-216ENST00000593099 OSBPL5Q9H0X9 879 aaPredicted RBP11.11□□□□□ -0.63
LIG3-216ENST00000593099 TPCN1Q9ULQ1 816 aa11.11□□□□□ -0.63
LIG3-216ENST00000593099 GSG1L2A8MUP6 293 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 POTEB2H3BUK9 544 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 SH2B2O14492 632 aaPredicted RBP11.1□□□□□ -0.63
LIG3-216ENST00000593099 SLC16A2P36021 539 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 RASSF7Q02833 373 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 USP17L2Q6R6M4 530 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 SAMD7Q7Z3H4 446 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 TXLNBQ8N3L3 684 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 OTUD5Q96G74 571 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 VPS33BQ9H267 617 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 STX1AQ16623 288 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 CDC42EP5Q6NZY7 148 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 C3orf67Q6ZVT6 689 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 CDC37L1Q7L3B6 337 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 HS2ST1Q7LGA3 356 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 SLC44A5Q8NCS7 719 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 GPKOWQ92917 476 aaPredicted RBP eCLIP11.1□□□□□ -0.63
LIG3-216ENST00000593099 CAMKK2Q96RR4 588 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 SEPT11Q9NVA2 429 aaKnown RBP11.1□□□□□ -0.63
LIG3-216ENST00000593099 HOXC10Q9NYD6 342 aa11.1□□□□□ -0.63
LIG3-216ENST00000593099 LRWD1Q9UFC0 647 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms