RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 HELLSQ9NRZ9 838 aa16.62■□□□□ 0.25
CLIP3-205ENST00000592017 BAZ2AQ9UIF9 1905 aaKnown RBP16.61■□□□□ 0.25
CLIP3-205ENST00000592017 GJA8P48165 433 aa16.61■□□□□ 0.25
CLIP3-205ENST00000592017 ERVK-9P63128 1117 aa16.61■□□□□ 0.25
CLIP3-205ENST00000592017 ERVK-24P63145 666 aa16.61■□□□□ 0.25
CLIP3-205ENST00000592017 MCMDC2Q4G0Z9 681 aa16.61■□□□□ 0.25
CLIP3-205ENST00000592017 PAGR1Q9BTK6 254 aa16.61■□□□□ 0.25
CLIP3-205ENST00000592017 RPAP3Q9H6T3 665 aaPredicted RBP16.61■□□□□ 0.25
CLIP3-205ENST00000592017 DIAPH3Q9NSV4 1193 aa16.61■□□□□ 0.25
CLIP3-205ENST00000592017 NEFLP07196 543 aa16.6■□□□□ 0.25
CLIP3-205ENST00000592017 SDSP20132 328 aa16.6■□□□□ 0.25
CLIP3-205ENST00000592017 TTC22Q5TAA0 569 aa16.6■□□□□ 0.25
CLIP3-205ENST00000592017 VPS53Q5VIR6 699 aa16.6■□□□□ 0.25
CLIP3-205ENST00000592017 GTF3C2Q8WUA4 911 aaPredicted RBP16.6■□□□□ 0.25
CLIP3-205ENST00000592017 CCDC17Q96LX7 622 aa16.6■□□□□ 0.25
CLIP3-205ENST00000592017 MKNK2Q9HBH9 465 aa16.6■□□□□ 0.25
CLIP3-205ENST00000592017 RABGAP1Q9Y3P9 1069 aa16.6■□□□□ 0.25
CLIP3-205ENST00000592017 ROBO3Q96MS0 1386 aa16.6■□□□□ 0.25
CLIP3-205ENST00000592017 GSPT1P15170 499 aaKnown RBP16.59■□□□□ 0.25
CLIP3-205ENST00000592017 ICA1Q05084 483 aa16.59■□□□□ 0.25
CLIP3-205ENST00000592017 TRIM32Q13049 653 aa16.59■□□□□ 0.25
CLIP3-205ENST00000592017 ZNF589Q86UQ0 364 aaPredicted RBP16.59■□□□□ 0.25
CLIP3-205ENST00000592017 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.59■□□□□ 0.25
CLIP3-205ENST00000592017 BTBD7Q9P203 1132 aa16.59■□□□□ 0.25
CLIP3-205ENST00000592017 SPDYE16A6NNV3 312 aaPredicted RBP16.58■□□□□ 0.24
CLIP3-205ENST00000592017 FOXP2O15409 715 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 PRDM1O75626 825 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 CYP2B6P20813 491 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 MAPK4P31152 587 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 ATP2B2Q01814 1243 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 PPARAQ07869 468 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 CWC27Q6UX04 472 aaKnown RBP16.58■□□□□ 0.24
CLIP3-205ENST00000592017 LBX2Q6XYB7 198 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 UBE2Q1Q7Z7E8 422 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 TICAM2Q86XR7 235 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 NKX2-3Q8TAU0 364 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 U2AF1L4Q8WU68 220 aaKnown RBP16.58■□□□□ 0.24
CLIP3-205ENST00000592017 USP6NLQ92738 828 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 TMX2Q9Y320 296 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 CCDC171Q6TFL3 1326 aa16.58■□□□□ 0.24
CLIP3-205ENST00000592017 HIP1O00291 1037 aa16.57■□□□□ 0.24
CLIP3-205ENST00000592017 SGPL1O95470 568 aa16.57■□□□□ 0.24
CLIP3-205ENST00000592017 SLC3A2P08195 630 aaKnown RBP16.57■□□□□ 0.24
CLIP3-205ENST00000592017 RASA1P20936 1047 aa16.57■□□□□ 0.24
CLIP3-205ENST00000592017 MORN1Q5T089 497 aa16.57■□□□□ 0.24
CLIP3-205ENST00000592017 CENPQQ7L2Z9 268 aaPredicted RBP16.57■□□□□ 0.24
CLIP3-205ENST00000592017 GPR142Q7Z601 462 aa16.57■□□□□ 0.24
CLIP3-205ENST00000592017 PLEKHH3Q7Z736 793 aa16.57■□□□□ 0.24
CLIP3-205ENST00000592017 DEFB118Q96PH6 123 aa16.57■□□□□ 0.24
CLIP3-205ENST00000592017 ZNF287Q9HBT7 754 aa16.57■□□□□ 0.24
CLIP3-205ENST00000592017 ARHGEF10LQ9HCE6 1279 aa16.57■□□□□ 0.24
CLIP3-205ENST00000592017 PAK6Q9NQU5 681 aaPredicted RBP16.57■□□□□ 0.24
CLIP3-205ENST00000592017 RBBP6Q7Z6E9 1792 aaKnown RBP16.56■□□□□ 0.24
CLIP3-205ENST00000592017 HMGCRP04035 888 aa16.56■□□□□ 0.24
CLIP3-205ENST00000592017 CENPBP07199 599 aaPredicted RBP16.56■□□□□ 0.24
CLIP3-205ENST00000592017 XRCC5P13010 732 aaKnown RBP16.56■□□□□ 0.24
CLIP3-205ENST00000592017 EEF2P13639 858 aaKnown RBP16.56■□□□□ 0.24
CLIP3-205ENST00000592017 MFAP1P55081 439 aaKnown RBP16.56■□□□□ 0.24
CLIP3-205ENST00000592017 COG2Q14746 738 aa16.56■□□□□ 0.24
CLIP3-205ENST00000592017 CCAR1Q8IX12 1150 aaKnown RBP16.56■□□□□ 0.24
CLIP3-205ENST00000592017 SPICE1Q8N0Z3 855 aa16.56■□□□□ 0.24
CLIP3-205ENST00000592017 SOCS4Q8WXH5 440 aa16.56■□□□□ 0.24
CLIP3-205ENST00000592017 TRIB2Q92519 343 aa16.56■□□□□ 0.24
CLIP3-205ENST00000592017 NUDT12Q9BQG2 462 aa16.56■□□□□ 0.24
CLIP3-205ENST00000592017 VCPKMTQ9H867 229 aa16.56■□□□□ 0.24
CLIP3-205ENST00000592017 HSPD1P10809 573 aaKnown RBP16.55■□□□□ 0.24
CLIP3-205ENST00000592017 CTDSPL2Q05D32 466 aa16.55■□□□□ 0.24
CLIP3-205ENST00000592017 PDE4BQ07343 736 aa16.55■□□□□ 0.24
CLIP3-205ENST00000592017 SKAP1Q86WV1 359 aa16.55■□□□□ 0.24
CLIP3-205ENST00000592017 ZNF444Q8N0Y2 327 aaPredicted RBP16.55■□□□□ 0.24
CLIP3-205ENST00000592017 LPAR1Q92633 364 aa16.55■□□□□ 0.24
CLIP3-205ENST00000592017 CCDC136Q96JN2 1154 aa16.55■□□□□ 0.24
CLIP3-205ENST00000592017 TANGO6Q9C0B7 1094 aa16.55■□□□□ 0.24
CLIP3-205ENST00000592017 CRISPLD2Q9H0B8 497 aa16.55■□□□□ 0.24
CLIP3-205ENST00000592017 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLIP3-205ENST00000592017 SH2D4AQ9H788 454 aa16.55■□□□□ 0.24
CLIP3-205ENST00000592017 KANSL2Q9H9L4 492 aa16.55■□□□□ 0.24
CLIP3-205ENST00000592017 HOXC10Q9NYD6 342 aa16.55■□□□□ 0.24
CLIP3-205ENST00000592017 DOCK3Q8IZD9 2030 aa16.55■□□□□ 0.24
CLIP3-205ENST00000592017 MGAMO43451 1857 aa16.54■□□□□ 0.24
CLIP3-205ENST00000592017 RAD21O60216 631 aa16.54■□□□□ 0.24
CLIP3-205ENST00000592017 TFRCP02786 760 aaKnown RBP16.54■□□□□ 0.24
CLIP3-205ENST00000592017 CCNA1P78396 465 aa16.54■□□□□ 0.24
CLIP3-205ENST00000592017 CCL14Q16627 93 aa16.54■□□□□ 0.24
CLIP3-205ENST00000592017 MAP3K21Q5TCX8 1036 aa16.54■□□□□ 0.24
CLIP3-205ENST00000592017 FGAP02671 866 aa16.53■□□□□ 0.24
CLIP3-205ENST00000592017 TSPY3P0CV98 308 aa16.53■□□□□ 0.24
CLIP3-205ENST00000592017 TSPY8P0CW00 308 aa16.53■□□□□ 0.24
CLIP3-205ENST00000592017 PTPREP23469 700 aa16.53■□□□□ 0.24
CLIP3-205ENST00000592017 DSG3P32926 999 aa16.53■□□□□ 0.24
CLIP3-205ENST00000592017 RGS2P41220 211 aa16.53■□□□□ 0.24
CLIP3-205ENST00000592017 HAND2P61296 217 aa16.53■□□□□ 0.24
CLIP3-205ENST00000592017 FAM47AQ5JRC9 791 aa16.53■□□□□ 0.24
CLIP3-205ENST00000592017 MOV10L1Q9BXT6 1211 aaKnown RBP16.53■□□□□ 0.24
CLIP3-205ENST00000592017 TOMM22Q9NS69 142 aa16.53■□□□□ 0.24
CLIP3-205ENST00000592017 RPTORQ8N122 1335 aa16.52■□□□□ 0.24
CLIP3-205ENST00000592017 FLOT1O75955 427 aa16.52■□□□□ 0.24
CLIP3-205ENST00000592017 FARP2O94887 1054 aaPredicted RBP16.52■□□□□ 0.24
CLIP3-205ENST00000592017 MAP2K5Q13163 448 aa16.52■□□□□ 0.24
CLIP3-205ENST00000592017 ALX1Q15699 326 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms