RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 CCDC12Q8WUD4 166 aaPredicted RBP12.33□□□□□ -0.43
VPS4B-206ENST00000591475 CCDC34Q96HJ3 373 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 PANX2Q96RD6 677 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 INCENPQ9NQS7 918 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 ACTN4O43707 911 aaKnown RBP12.33□□□□□ -0.44
VPS4B-206ENST00000591475 KARSQ15046 597 aaKnown RBP12.33□□□□□ -0.44
VPS4B-206ENST00000591475 MFSD6Q6ZSS7 791 aa12.33□□□□□ -0.44
VPS4B-206ENST00000591475 DHX58Q96C10 678 aa12.33□□□□□ -0.44
VPS4B-206ENST00000591475 DESI2Q9BSY9 194 aa12.33□□□□□ -0.44
VPS4B-206ENST00000591475 BRIP1Q9BX63 1249 aa12.33□□□□□ -0.44
VPS4B-206ENST00000591475 NAA15Q9BXJ9 866 aaKnown RBP12.33□□□□□ -0.44
VPS4B-206ENST00000591475 EPC1Q9H2F5 836 aa12.33□□□□□ -0.44
VPS4B-206ENST00000591475 EPB41L4AQ9HCS5 686 aaPredicted RBP12.33□□□□□ -0.44
VPS4B-206ENST00000591475 SAMSN1Q9NSI8 373 aaKnown RBP12.33□□□□□ -0.44
VPS4B-206ENST00000591475 BSDC1Q9NW68 430 aaPredicted RBP12.33□□□□□ -0.44
VPS4B-206ENST00000591475 CCDC196A0A1B0GTZ2 297 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 KLRG2A4D1S0 409 aaPredicted RBP12.32□□□□□ -0.44
VPS4B-206ENST00000591475 SASH3O75995 380 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 MBD4O95243 580 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 OAS2P29728 719 aaKnown RBP12.32□□□□□ -0.44
VPS4B-206ENST00000591475 RPS8P62241 208 aaKnown RBP12.32□□□□□ -0.44
VPS4B-206ENST00000591475 SMC1AQ14683 1233 aaKnown RBP12.32□□□□□ -0.44
VPS4B-206ENST00000591475 WTAPQ15007 396 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 PPFIBP1Q86W92 1011 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 GRAMD1CQ8IYS0 662 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 TXLNBQ8N3L3 684 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 SPATA20Q8TB22 786 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 PARD6BQ9BYG5 372 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 PCDHB6Q9Y5E3 794 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 MYH2Q9UKX2 1941 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 LRP5O75197 1615 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 ERICH2A1L162 156 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 TXLNAP40222 546 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 MAP3K12Q12852 859 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 GPS2Q13227 327 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 PUM3Q15397 648 aaKnown RBP12.32□□□□□ -0.44
VPS4B-206ENST00000591475 TMTC2Q8N394 836 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 CRACR2BQ8N4Y2 399 aaPredicted RBP12.32□□□□□ -0.44
VPS4B-206ENST00000591475 MAGEB6Q8N7X4 407 aa12.32□□□□□ -0.44
VPS4B-206ENST00000591475 RPGRQ92834 1020 aaKnown RBP12.32□□□□□ -0.44
VPS4B-206ENST00000591475 MRPL44Q9H9J2 332 aaKnown RBP12.32□□□□□ -0.44
VPS4B-206ENST00000591475 RCAN1P53805 252 aa12.31□□□□□ -0.44
VPS4B-206ENST00000591475 BRD3Q15059 726 aa12.31□□□□□ -0.44
VPS4B-206ENST00000591475 RRP12Q5JTH9 1297 aaKnown RBP12.31□□□□□ -0.44
VPS4B-206ENST00000591475 SPATA1Q5VX52 437 aa12.31□□□□□ -0.44
VPS4B-206ENST00000591475 SPATA5Q8NB90 893 aa12.31□□□□□ -0.44
VPS4B-206ENST00000591475 STAG1Q8WVM7 1258 aa12.31□□□□□ -0.44
VPS4B-206ENST00000591475 LPIN2Q92539 896 aa12.31□□□□□ -0.44
VPS4B-206ENST00000591475 CELF1Q92879 486 aaKnown RBP12.31□□□□□ -0.44
VPS4B-206ENST00000591475 MED15Q96RN5 788 aa12.31□□□□□ -0.44
VPS4B-206ENST00000591475 MTA3Q9BTC8 594 aa12.31□□□□□ -0.44
VPS4B-206ENST00000591475 PDGFDQ9GZP0 370 aaPredicted RBP12.31□□□□□ -0.44
VPS4B-206ENST00000591475 CSRNP2Q9H175 543 aa12.31□□□□□ -0.44
VPS4B-206ENST00000591475 ARMT1Q9H993 441 aa12.31□□□□□ -0.44
VPS4B-206ENST00000591475 SYNRGQ9UMZ2 1314 aa12.31□□□□□ -0.44
VPS4B-206ENST00000591475 CCDC151A5D8V7 595 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 SOWAHDA6NJG2 315 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 KIF5CO60282 957 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 GNAT2P19087 354 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 PDE6BP35913 854 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 HNRNPH2P55795 449 aaKnown RBP12.3□□□□□ -0.44
VPS4B-206ENST00000591475 NR5A1Q13285 461 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 TUBB2AQ13885 445 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 MTF1Q14872 753 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 SRGAP1Q7Z6B7 1085 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 CTAGE1Q96RT6 745 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 TUBB2BQ9BVA1 445 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 FUT8Q9BYC5 575 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 NACAP1Q9BZK3 213 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 TOMM22Q9NS69 142 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 AATFQ9NY61 560 aaKnown RBP eCLIP12.3□□□□□ -0.44
VPS4B-206ENST00000591475 ADGRG1Q9Y653 693 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 TACC3Q9Y6A5 838 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 MYH8P13535 1937 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 NRXN2Q9P2S2 1712 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 GSG1L2A8MUP6 293 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 POTEB2H3BUK9 544 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 HOXA10P31260 410 aaPredicted RBP12.3□□□□□ -0.44
VPS4B-206ENST00000591475 TDO2P48775 406 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 CHMP4BP1P59074 171 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 RBL2Q08999 1139 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 GRAPQ13588 217 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 FILIP1LQ4L180 1135 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 CEP112Q8N8E3 955 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 IGSF22Q8N9C0 903 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 GRAPLQ8TC17 118 aaPredicted RBP12.3□□□□□ -0.44
VPS4B-206ENST00000591475 RBM17Q96I25 401 aaKnown RBP12.3□□□□□ -0.44
VPS4B-206ENST00000591475 ZKSCAN3Q9BRR0 538 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 CABP5Q9NP86 173 aa12.3□□□□□ -0.44
VPS4B-206ENST00000591475 TRIM75PA6NK02 468 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 SEMA3EO15041 775 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 TEX33O43247 280 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 SLC5A1P13866 664 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 ATP2B1P20020 1258 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 FGFR2P21802 821 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 TUBB4BP68371 445 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 CHRNDQ07001 517 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 LONRF2Q1L5Z9 754 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 USP49Q70CQ1 688 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 APTXQ7Z2E3 356 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms