RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 HLA-DOAP06340 250 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 RARBP10826 455 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 VCAM1P19320 739 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 ANKRD33Q7Z3H0 272 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 MAPKAPK5Q8IW41 473 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 KIAA1683Q9H0B3 1180 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 COPRSQ9NQ92 184 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 XPNPEP3Q9NQH7 507 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 AATFQ9NY61 560 aaKnown RBP eCLIP13.53□□□□□ -0.24
ZNF540-209ENST00000590588 HOXC10Q9NYD6 342 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 MSRAQ9UJ68 235 aa13.53□□□□□ -0.24
ZNF540-209ENST00000590588 PA2G4Q9UQ80 394 aaKnown RBP13.53□□□□□ -0.24
ZNF540-209ENST00000590588 A0A1W2PQ45 241 aaPredicted RBP13.52□□□□□ -0.25
ZNF540-209ENST00000590588 A0A1W2PQY0 241 aa13.52□□□□□ -0.25
ZNF540-209ENST00000590588 SPDYE16A6NNV3 312 aaPredicted RBP13.52□□□□□ -0.25
ZNF540-209ENST00000590588 UBTFL1P0CB47 393 aaPredicted RBP13.52□□□□□ -0.25
ZNF540-209ENST00000590588 PPP4CP60510 307 aa13.52□□□□□ -0.25
ZNF540-209ENST00000590588 PPIGQ13427 754 aaKnown RBP eCLIP13.52□□□□□ -0.25
ZNF540-209ENST00000590588 RAB30Q15771 203 aa13.52□□□□□ -0.25
ZNF540-209ENST00000590588 CCDC184Q52MB2 194 aa13.52□□□□□ -0.25
ZNF540-209ENST00000590588 TMEM240Q5SV17 173 aa13.52□□□□□ -0.25
ZNF540-209ENST00000590588 MFSD5Q6N075 450 aa13.52□□□□□ -0.25
ZNF540-209ENST00000590588 SHCBP1Q8NEM2 672 aa13.52□□□□□ -0.25
ZNF540-209ENST00000590588 NEUROD6Q96NK8 337 aa13.52□□□□□ -0.25
ZNF540-209ENST00000590588 MOV10L1Q9BXT6 1211 aaKnown RBP13.52□□□□□ -0.25
ZNF540-209ENST00000590588 NRBP1Q9UHY1 535 aa13.52□□□□□ -0.25
ZNF540-209ENST00000590588 HDAC5Q9UQL6 1122 aa13.52□□□□□ -0.25
ZNF540-209ENST00000590588 BDP1A6H8Y1 2624 aa13.51□□□□□ -0.25
ZNF540-209ENST00000590588 FLT1P17948 1338 aa13.51□□□□□ -0.25
ZNF540-209ENST00000590588 COG2Q14746 738 aa13.51□□□□□ -0.25
ZNF540-209ENST00000590588 TMEM31Q5JXX7 168 aa13.51□□□□□ -0.25
ZNF540-209ENST00000590588 GORABQ5T7V8 394 aa13.51□□□□□ -0.25
ZNF540-209ENST00000590588 RASIP1Q5U651 963 aa13.51□□□□□ -0.25
ZNF540-209ENST00000590588 NAA16Q6N069 864 aaPredicted RBP13.51□□□□□ -0.25
ZNF540-209ENST00000590588 ABRAQ8N0Z2 381 aa13.51□□□□□ -0.25
ZNF540-209ENST00000590588 NUP133Q8WUM0 1156 aa13.51□□□□□ -0.25
ZNF540-209ENST00000590588 TSEN34Q9BSV6 310 aaKnown RBP13.51□□□□□ -0.25
ZNF540-209ENST00000590588 SPATC1LQ9H0A9 340 aa13.51□□□□□ -0.25
ZNF540-209ENST00000590588 EPHX3Q9H6B9 360 aa13.51□□□□□ -0.25
ZNF540-209ENST00000590588 RPAP3Q9H6T3 665 aaPredicted RBP13.51□□□□□ -0.25
ZNF540-209ENST00000590588 SLC28A3Q9HAS3 691 aa13.51□□□□□ -0.25
ZNF540-209ENST00000590588 PGK1P00558 417 aa13.5□□□□□ -0.25
ZNF540-209ENST00000590588 ERCC3P19447 782 aa13.5□□□□□ -0.25
ZNF540-209ENST00000590588 RAB3GAP1Q15042 981 aa13.5□□□□□ -0.25
ZNF540-209ENST00000590588 TATDN1Q6P1N9 297 aa13.5□□□□□ -0.25
ZNF540-209ENST00000590588 PI16Q6UXB8 463 aa13.5□□□□□ -0.25
ZNF540-209ENST00000590588 C16orf59Q7L2K0 433 aa13.5□□□□□ -0.25
ZNF540-209ENST00000590588 MAML3Q96JK9 1138 aa13.5□□□□□ -0.25
ZNF540-209ENST00000590588 MROH8Q9H579 483 aa13.5□□□□□ -0.25
ZNF540-209ENST00000590588 STARD7Q9NQZ5 370 aa13.5□□□□□ -0.25
ZNF540-209ENST00000590588 ARID4AP29374 1257 aaPredicted RBP13.49□□□□□ -0.25
ZNF540-209ENST00000590588 TFCP2Q12800 502 aa13.49□□□□□ -0.25
ZNF540-209ENST00000590588 TMEM199Q8N511 208 aa13.49□□□□□ -0.25
ZNF540-209ENST00000590588 CABP5Q9NP86 173 aa13.49□□□□□ -0.25
ZNF540-209ENST00000590588 SAP30BPQ9UHR5 308 aaKnown RBP13.49□□□□□ -0.25
ZNF540-209ENST00000590588 MYO9BQ13459 2157 aa13.49□□□□□ -0.25
ZNF540-209ENST00000590588 MROH7Q68CQ1 1323 aa13.48□□□□□ -0.25
ZNF540-209ENST00000590588 GPR37L1O60883 481 aa13.48□□□□□ -0.25
ZNF540-209ENST00000590588 TFF2Q03403 129 aa13.48□□□□□ -0.25
ZNF540-209ENST00000590588 CERKLQ49MI3 558 aaPredicted RBP13.48□□□□□ -0.25
ZNF540-209ENST00000590588 PSRC1Q6PGN9 363 aaPredicted RBP13.48□□□□□ -0.25
ZNF540-209ENST00000590588 ZNF365Q70YC5 407 aa13.48□□□□□ -0.25
ZNF540-209ENST00000590588 ALYREFQ86V81 257 aaKnown RBP13.48□□□□□ -0.25
ZNF540-209ENST00000590588 NCAPG2Q86XI2 1143 aa13.48□□□□□ -0.25
ZNF540-209ENST00000590588 MB21D1Q8N884 522 aa13.48□□□□□ -0.25
ZNF540-209ENST00000590588 ACER1Q8TDN7 264 aa13.48□□□□□ -0.25
ZNF540-209ENST00000590588 HERVK_113Q902F9 699 aa13.48□□□□□ -0.25
ZNF540-209ENST00000590588 TBX21Q9UL17 535 aa13.48□□□□□ -0.25
ZNF540-209ENST00000590588 SIPA1L1O43166 1804 aa13.48□□□□□ -0.25
ZNF540-209ENST00000590588 TCF20Q9UGU0 1960 aaKnown RBP13.47□□□□□ -0.25
ZNF540-209ENST00000590588 MOXD2PA6NHM9 499 aa13.47□□□□□ -0.25
ZNF540-209ENST00000590588 UQCRFS1P1P0C7P4 283 aa13.47□□□□□ -0.25
ZNF540-209ENST00000590588 FCER1AP12319 257 aa13.47□□□□□ -0.25
ZNF540-209ENST00000590588 CSF2RAP15509 400 aa13.47□□□□□ -0.25
ZNF540-209ENST00000590588 KCNQ1P51787 676 aa13.47□□□□□ -0.25
ZNF540-209ENST00000590588 ACLYP53396 1101 aa13.47□□□□□ -0.25
ZNF540-209ENST00000590588 ABCB5Q2M3G0 1257 aa13.47□□□□□ -0.25
ZNF540-209ENST00000590588 MICALL1Q8N3F8 863 aa13.47□□□□□ -0.25
ZNF540-209ENST00000590588 MTIF3Q9H2K0 278 aaKnown RBP13.47□□□□□ -0.25
ZNF540-209ENST00000590588 NKX2-4Q9H2Z4 354 aa13.47□□□□□ -0.25
ZNF540-209ENST00000590588 SERPINB13Q9UIV8 391 aa13.47□□□□□ -0.25
ZNF540-209ENST00000590588 PLXNA1Q9UIW2 1896 aa13.46□□□□□ -0.25
ZNF540-209ENST00000590588 ERC2O15083 957 aa13.46□□□□□ -0.25
ZNF540-209ENST00000590588 IGSF3O75054 1194 aa13.46□□□□□ -0.25
ZNF540-209ENST00000590588 ACRP10323 421 aa13.46□□□□□ -0.25
ZNF540-209ENST00000590588 AKR1A1P14550 325 aa13.46□□□□□ -0.25
ZNF540-209ENST00000590588 MCAMP43121 646 aa13.46□□□□□ -0.25
ZNF540-209ENST00000590588 PLS1Q14651 629 aa13.46□□□□□ -0.25
ZNF540-209ENST00000590588 SKIV2LQ15477 1246 aaKnown RBP13.46□□□□□ -0.25
ZNF540-209ENST00000590588 TINF2Q9BSI4 451 aa13.46□□□□□ -0.25
ZNF540-209ENST00000590588 DIS3Q9Y2L1 958 aaKnown RBP13.46□□□□□ -0.25
ZNF540-209ENST00000590588 ZNF236Q9UL36 1845 aa13.46□□□□□ -0.26
ZNF540-209ENST00000590588 ELP1O95163 1332 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 ZNF521Q96K83 1311 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 APBB1O00213 710 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 ADAMTS4O75173 837 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 FGBP02675 491 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 CDK7P50613 346 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 KCNA10Q16322 511 aa13.45□□□□□ -0.26
ZNF540-209ENST00000590588 ADGRA1Q86SQ6 560 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms