RNA–Protein interactions for RNA: ENST00000588210.1

CCDC43-203, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CCDC43, Length 2,067 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-203ENST00000588210 FOXP4Q8IVH2 680 aaPredicted RBP16.92■□□□□ 0.3
CCDC43-203ENST00000588210 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.92■□□□□ 0.3
CCDC43-203ENST00000588210 SAP30BPQ9UHR5 308 aaKnown RBP16.92■□□□□ 0.3
CCDC43-203ENST00000588210 HSPD1P10809 573 aaKnown RBP16.92■□□□□ 0.3
CCDC43-203ENST00000588210 ZNF157P51786 506 aaPredicted RBP16.92■□□□□ 0.3
CCDC43-203ENST00000588210 ZNF75DP51815 510 aa16.92■□□□□ 0.3
CCDC43-203ENST00000588210 MAP3K9P80192 1104 aa16.92■□□□□ 0.3
CCDC43-203ENST00000588210 PAXIP1Q6ZW49 1069 aaPredicted RBP16.92■□□□□ 0.3
CCDC43-203ENST00000588210 CCDC102AQ96A19 550 aa16.92■□□□□ 0.3
CCDC43-203ENST00000588210 HERC5Q9UII4 1024 aaKnown RBP16.92■□□□□ 0.3
CCDC43-203ENST00000588210 ZNF112Q9UJU3 913 aa16.92■□□□□ 0.3
CCDC43-203ENST00000588210 RCOR1Q9UKL0 485 aa16.92■□□□□ 0.3
CCDC43-203ENST00000588210 MYH1P12882 1939 aa16.91■□□□□ 0.3
CCDC43-203ENST00000588210 E7EWF7 191 aa16.91■□□□□ 0.3
CCDC43-203ENST00000588210 APOBRQ0VD83 1088 aa16.91■□□□□ 0.3
CCDC43-203ENST00000588210 CHMP4CQ96CF2 233 aa16.91■□□□□ 0.3
CCDC43-203ENST00000588210 WRNIP1Q96S55 665 aa16.91■□□□□ 0.3
CCDC43-203ENST00000588210 MCM9Q9NXL9 1143 aa16.91■□□□□ 0.3
CCDC43-203ENST00000588210 CTAGE5O15320 804 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 POLR3DP05423 398 aaPredicted RBP16.9■□□□□ 0.3
CCDC43-203ENST00000588210 PTGS1P23219 599 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 ZNF165P49910 485 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 CYP4F22Q6NT55 531 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 METTL16Q86W50 562 aaKnown RBP16.9■□□□□ 0.3
CCDC43-203ENST00000588210 FBXL16Q8N461 479 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 ZNF274Q96GC6 653 aaPredicted RBP16.9■□□□□ 0.3
CCDC43-203ENST00000588210 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.9■□□□□ 0.3
CCDC43-203ENST00000588210 GSG1L2A8MUP6 293 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 PATL2C9JE40 543 aaKnown RBP16.9■□□□□ 0.3
CCDC43-203ENST00000588210 VEGFBP49765 207 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.9■□□□□ 0.3
CCDC43-203ENST00000588210 CAPNS2Q96L46 248 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 DNAJC25Q9H1X3 360 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 EHD4Q9H223 541 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 CSADQ9Y600 493 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 NAV1Q8NEY1 1877 aa16.9■□□□□ 0.3
CCDC43-203ENST00000588210 CDC25BP30305 580 aa16.89■□□□□ 0.29
CCDC43-203ENST00000588210 AMOTL1Q8IY63 956 aa16.89■□□□□ 0.29
CCDC43-203ENST00000588210 CRACR2BQ8N4Y2 399 aaPredicted RBP16.89■□□□□ 0.29
CCDC43-203ENST00000588210 SLC10A4Q96EP9 437 aa16.89■□□□□ 0.29
CCDC43-203ENST00000588210 ZNF396Q96N95 335 aaPredicted RBP16.89■□□□□ 0.29
CCDC43-203ENST00000588210 DDX60LQ5H9U9 1706 aaKnown RBP16.89■□□□□ 0.29
CCDC43-203ENST00000588210 PHF20L1A8MW92 1017 aa16.89■□□□□ 0.29
CCDC43-203ENST00000588210 SLC10A3P09131 477 aa16.89■□□□□ 0.29
CCDC43-203ENST00000588210 VGLL4Q14135 290 aa16.89■□□□□ 0.29
CCDC43-203ENST00000588210 TRIM34Q9BYJ4 488 aa16.89■□□□□ 0.29
CCDC43-203ENST00000588210 SERPINB13Q9UIV8 391 aa16.89■□□□□ 0.29
CCDC43-203ENST00000588210 CEP350Q5VT06 3117 aa16.88■□□□□ 0.29
CCDC43-203ENST00000588210 FAM155AB1AL88 458 aaPredicted RBP16.88■□□□□ 0.29
CCDC43-203ENST00000588210 APPP05067 770 aa16.88■□□□□ 0.29
CCDC43-203ENST00000588210 PLCD1P51178 756 aa16.88■□□□□ 0.29
CCDC43-203ENST00000588210 EVCP57679 992 aa16.88■□□□□ 0.29
CCDC43-203ENST00000588210 SLC4A8Q2Y0W8 1093 aa16.88■□□□□ 0.29
CCDC43-203ENST00000588210 SARM1Q6SZW1 724 aa16.88■□□□□ 0.29
CCDC43-203ENST00000588210 RASAL3Q86YV0 1011 aa16.88■□□□□ 0.29
CCDC43-203ENST00000588210 ZKSCAN4Q969J2 545 aaPredicted RBP16.88■□□□□ 0.29
CCDC43-203ENST00000588210 CLMNQ96JQ2 1002 aa16.88■□□□□ 0.29
CCDC43-203ENST00000588210 NACAP1Q9BZK3 213 aa16.88■□□□□ 0.29
CCDC43-203ENST00000588210 TRIM5Q9C035 493 aa16.88■□□□□ 0.29
CCDC43-203ENST00000588210 ARPP21Q9UBL0 812 aaPredicted RBP16.88■□□□□ 0.29
CCDC43-203ENST00000588210 TAOK2Q9UL54 1235 aa16.88■□□□□ 0.29
CCDC43-203ENST00000588210 SIPA1L1O43166 1804 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 OTOFQ9HC10 1997 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 USP17L12C9JPN9 530 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 USP17L21D6R901 530 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 SLURP2P0DP57 97 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 PDIA3P30101 505 aaKnown RBP16.87■□□□□ 0.29
CCDC43-203ENST00000588210 GRM1Q13255 1194 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 STX1AQ16623 288 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 CCDC186Q7Z3E2 898 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 CCAR1Q8IX12 1150 aaKnown RBP16.87■□□□□ 0.29
CCDC43-203ENST00000588210 FAM196BA6NMK8 535 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 CTNND1O60716 968 aaKnown RBP16.87■□□□□ 0.29
CCDC43-203ENST00000588210 INPP5BP32019 993 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 CCT2P78371 535 aaKnown RBP16.87■□□□□ 0.29
CCDC43-203ENST00000588210 NOGQ13253 232 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 IQCB1Q15051 598 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 NOL9Q5SY16 702 aaKnown RBP16.87■□□□□ 0.29
CCDC43-203ENST00000588210 C12orf60Q5U649 245 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 CTR9Q6PD62 1173 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 CCDC73Q6ZRK6 1079 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 IFNL3Q8IZI9 196 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 USP28Q96RU2 1077 aa16.87■□□□□ 0.29
CCDC43-203ENST00000588210 BAZ2AQ9UIF9 1905 aaKnown RBP16.86■□□□□ 0.29
CCDC43-203ENST00000588210 MAP2K2P36507 400 aa16.86■□□□□ 0.29
CCDC43-203ENST00000588210 SBK1Q52WX2 424 aa16.86■□□□□ 0.29
CCDC43-203ENST00000588210 GOLPH3LQ9H4A5 285 aa16.86■□□□□ 0.29
CCDC43-203ENST00000588210 DNAJC18Q9H819 358 aa16.86■□□□□ 0.29
CCDC43-203ENST00000588210 ELP3Q9H9T3 547 aa16.86■□□□□ 0.29
CCDC43-203ENST00000588210 EPB41L4AQ9HCS5 686 aaPredicted RBP16.86■□□□□ 0.29
CCDC43-203ENST00000588210 SNCAIPQ9Y6H5 919 aa16.86■□□□□ 0.29
CCDC43-203ENST00000588210 TDO2P48775 406 aa16.85■□□□□ 0.29
CCDC43-203ENST00000588210 CEBPZQ03701 1054 aaKnown RBP16.85■□□□□ 0.29
CCDC43-203ENST00000588210 SNW1Q13573 536 aaKnown RBP16.85■□□□□ 0.29
CCDC43-203ENST00000588210 DRC7Q8IY82 874 aa16.85■□□□□ 0.29
CCDC43-203ENST00000588210 SCYL3Q8IZE3 742 aa16.85■□□□□ 0.29
CCDC43-203ENST00000588210 ZNF710Q8N1W2 664 aa16.85■□□□□ 0.29
CCDC43-203ENST00000588210 ENGASEQ8NFI3 743 aa16.85■□□□□ 0.29
CCDC43-203ENST00000588210 FTOQ9C0B1 505 aaKnown RBP eCLIP16.85■□□□□ 0.29
CCDC43-203ENST00000588210 NCOA5Q9HCD5 579 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms