RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 FAM83AQ86UY5 434 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 RAB11FIP4Q86YS3 637 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 FOXP4Q8IVH2 680 aaPredicted RBP7.18□□□□□ -1.26
LIG3-206ENST00000586058 MICALL2Q8IY33 904 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 FANCBQ8NB91 859 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 PNMA1Q8ND90 353 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 NEDD1Q8NHV4 660 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 SMARCC2Q8TAQ2 1214 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 FAM151AQ8WW52 585 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 FOXD4L4Q8WXT5 416 aaPredicted RBP7.18□□□□□ -1.26
LIG3-206ENST00000586058 DYNLL2Q96FJ2 89 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 MAP3K14Q99558 947 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 LZTS2Q9BRK4 669 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 SYT17Q9BSW7 474 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 SLC26A6Q9BXS9 759 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 RNF26Q9BY78 433 aaPredicted RBP7.18□□□□□ -1.26
LIG3-206ENST00000586058 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.18□□□□□ -1.26
LIG3-206ENST00000586058 NCOA5Q9HCD5 579 aaKnown RBP7.18□□□□□ -1.26
LIG3-206ENST00000586058 ARHGEF10LQ9HCE6 1279 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 RNF181Q9P0P0 153 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 ZNF70Q9UC06 446 aaPredicted RBP7.18□□□□□ -1.26
LIG3-206ENST00000586058 SEC63Q9UGP8 760 aaKnown RBP7.18□□□□□ -1.26
LIG3-206ENST00000586058 BRPF3Q9ULD4 1205 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 BOLA1Q9Y3E2 137 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 GOLGA6L4A6NEF3 574 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 GRIN3BO60391 1043 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 JAK2O60674 1132 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 FMNL1O95466 1100 aaPredicted RBP7.17□□□□□ -1.26
LIG3-206ENST00000586058 TTLL1O95922 423 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 PARP1P09874 1014 aaKnown RBP7.17□□□□□ -1.26
LIG3-206ENST00000586058 IFNAR1P17181 557 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 RXRAP19793 462 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 MCM4P33991 863 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 GMPSP49915 693 aaPredicted RBP7.17□□□□□ -1.26
LIG3-206ENST00000586058 CACNB3P54284 484 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 EMP3P54852 163 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 ATP2B2Q01814 1243 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 SEC23AQ15436 765 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 ABCB5Q2M3G0 1257 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 BRAPQ7Z569 592 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 SLC44A5Q8NCS7 719 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 CCDC148Q8NFR7 591 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 CCDC12Q8WUD4 166 aaPredicted RBP7.17□□□□□ -1.26
LIG3-206ENST00000586058 SYAP1Q96A49 352 aaPredicted RBP7.17□□□□□ -1.26
LIG3-206ENST00000586058 PRMT6Q96LA8 375 aaPredicted RBP7.17□□□□□ -1.26
LIG3-206ENST00000586058 ZNF396Q96N95 335 aaPredicted RBP7.17□□□□□ -1.26
LIG3-206ENST00000586058 GMLQ99445 158 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 ALG1Q9BT22 464 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 MYL10Q9BUA6 226 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 DDX4Q9NQI0 724 aaKnown RBP7.17□□□□□ -1.26
LIG3-206ENST00000586058 CFAP45Q9UL16 551 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 PHIPQ8WWQ0 1821 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 PTPRFP10586 1907 aa7.17□□□□□ -1.26
LIG3-206ENST00000586058 COL11A1P12107 1806 aaPredicted RBP7.16□□□□□ -1.26
LIG3-206ENST00000586058 TRPM7Q96QT4 1865 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 POTEB3A0JP26 581 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 WNT10BO00744 389 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 RAD21O60216 631 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 BAG4O95429 457 aaKnown RBP7.16□□□□□ -1.26
LIG3-206ENST00000586058 MBD3O95983 291 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 FOSBP53539 338 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 ZNF280AP59817 542 aaPredicted RBP7.16□□□□□ -1.26
LIG3-206ENST00000586058 ICA1Q05084 483 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 NFIAQ12857 509 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 CCDC96Q2M329 555 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 ASPRV1Q53RT3 343 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 ATL3Q6DD88 541 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 POTEBQ6S5H4 581 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 EFCAB3Q8N7B9 438 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 RNF25Q96BH1 459 aaPredicted RBP7.16□□□□□ -1.26
LIG3-206ENST00000586058 CEP95Q96GE4 821 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 SCAND2PQ9GZW5 306 aaPredicted RBP7.16□□□□□ -1.26
LIG3-206ENST00000586058 KANSL2Q9H9L4 492 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 INCENPQ9NQS7 918 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 GPHNQ9NQX3 736 aaPredicted RBP7.16□□□□□ -1.26
LIG3-206ENST00000586058 FAM198AQ9UFP1 575 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 CNOT7Q9UIV1 285 aaKnown RBP7.16□□□□□ -1.26
LIG3-206ENST00000586058 HPS5Q9UPZ3 1129 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 MTMR7Q9Y216 660 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 PPP2R3BQ9Y5P8 575 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 ZNF541Q9H0D2 1346 aa7.16□□□□□ -1.26
LIG3-206ENST00000586058 LOXHD1Q8IVV2 1947 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 DDTLA6NHG4 134 aaPredicted RBP7.15□□□□□ -1.26
LIG3-206ENST00000586058 hCG_1984214I3L0E3 225 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 NMT2O60551 498 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 HOXB3P14651 431 aaPredicted RBP7.15□□□□□ -1.26
LIG3-206ENST00000586058 NF2P35240 595 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 ADD1P35611 737 aaKnown RBP7.15□□□□□ -1.26
LIG3-206ENST00000586058 PLCB2Q00722 1185 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 GABPAQ06546 454 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 ST3GAL1Q11201 340 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 TRAF1Q13077 416 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 IKQ13123 557 aaPredicted RBP7.15□□□□□ -1.26
LIG3-206ENST00000586058 GRM4Q14833 912 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 TBC1D10BQ4KMP7 808 aaPredicted RBP7.15□□□□□ -1.26
LIG3-206ENST00000586058 GPATCH4Q5T3I0 446 aaKnown RBP7.15□□□□□ -1.26
LIG3-206ENST00000586058 CLEC17AQ6ZS10 378 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 TMTC3Q6ZXV5 915 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 ILDR2Q71H61 639 aa7.15□□□□□ -1.26
LIG3-206ENST00000586058 CDC37L1Q7L3B6 337 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms