RNA–Protein interactions for RNA: ENST00000584944.5

TRAF4-215, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 825 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-215ENST00000584944 CLIP2Q9UDT6 1046 aa16.32■□□□□ 0.2
TRAF4-215ENST00000584944 KCNH4Q9UQ05 1017 aa16.32■□□□□ 0.2
TRAF4-215ENST00000584944 MKI67P46013 3256 aaKnown RBP16.32■□□□□ 0.2
TRAF4-215ENST00000584944 A0A0G2JLL6 359 aaPredicted RBP16.31■□□□□ 0.2
TRAF4-215ENST00000584944 EPB41L2O43491 1005 aaKnown RBP16.31■□□□□ 0.2
TRAF4-215ENST00000584944 JAG1P78504 1218 aa16.31■□□□□ 0.2
TRAF4-215ENST00000584944 PRRT2Q7Z6L0 340 aaPredicted RBP16.31■□□□□ 0.2
TRAF4-215ENST00000584944 CEP95Q96GE4 821 aa16.31■□□□□ 0.2
TRAF4-215ENST00000584944 NBPF3Q9H094 633 aa16.31■□□□□ 0.2
TRAF4-215ENST00000584944 KIAA1683Q9H0B3 1180 aa16.31■□□□□ 0.2
TRAF4-215ENST00000584944 ZFYVE28Q9HCC9 887 aa16.31■□□□□ 0.2
TRAF4-215ENST00000584944 POTEFA5A3E0 1075 aa16.3■□□□□ 0.2
TRAF4-215ENST00000584944 HMGB1P09429 215 aaKnown RBP16.3■□□□□ 0.2
TRAF4-215ENST00000584944 FGRP09769 529 aa16.3■□□□□ 0.2
TRAF4-215ENST00000584944 PSMA5P28066 241 aa16.3■□□□□ 0.2
TRAF4-215ENST00000584944 IRX3P78415 501 aaPredicted RBP16.3■□□□□ 0.2
TRAF4-215ENST00000584944 NECTIN1Q15223 517 aa16.3■□□□□ 0.2
TRAF4-215ENST00000584944 TAF1CQ15572 869 aaPredicted RBP16.3■□□□□ 0.2
TRAF4-215ENST00000584944 CLEC10AQ8IUN9 316 aa16.3■□□□□ 0.2
TRAF4-215ENST00000584944 FAM43AQ8N2R8 423 aa16.3■□□□□ 0.2
TRAF4-215ENST00000584944 PROCA1Q8NCQ7 364 aaPredicted RBP16.3■□□□□ 0.2
TRAF4-215ENST00000584944 ARMC5Q96C12 935 aa16.3■□□□□ 0.2
TRAF4-215ENST00000584944 MTMR4Q9NYA4 1195 aa16.3■□□□□ 0.2
TRAF4-215ENST00000584944 NYAP2Q9P242 653 aa16.3■□□□□ 0.2
TRAF4-215ENST00000584944 PNMA3Q9UL41 463 aa16.3■□□□□ 0.2
TRAF4-215ENST00000584944 ATAD5Q96QE3 1844 aa16.29■□□□□ 0.2
TRAF4-215ENST00000584944 BRCA2P51587 3418 aa16.29■□□□□ 0.2
TRAF4-215ENST00000584944 OSBPP22059 807 aa16.29■□□□□ 0.2
TRAF4-215ENST00000584944 MCM5P33992 734 aa16.29■□□□□ 0.2
TRAF4-215ENST00000584944 ACER1Q8TDN7 264 aa16.29■□□□□ 0.2
TRAF4-215ENST00000584944 SMCR8Q8TEV9 937 aaPredicted RBP16.29■□□□□ 0.2
TRAF4-215ENST00000584944 LPAR1Q92633 364 aa16.29■□□□□ 0.2
TRAF4-215ENST00000584944 ZSCAN10Q96SZ4 725 aaPredicted RBP16.29■□□□□ 0.2
TRAF4-215ENST00000584944 ZKSCAN3Q9BRR0 538 aa16.29■□□□□ 0.2
TRAF4-215ENST00000584944 TANGO6Q9C0B7 1094 aa16.29■□□□□ 0.2
TRAF4-215ENST00000584944 KAT14Q9H8E8 782 aa16.29■□□□□ 0.2
TRAF4-215ENST00000584944 PLIN4Q96Q06 1357 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 PDHXO00330 501 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 IFIT3O14879 490 aaKnown RBP16.28■□□□□ 0.2
TRAF4-215ENST00000584944 NMT2O60551 498 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 GUCY1A2P33402 732 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 HSPA4P34932 840 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 IKQ13123 557 aaPredicted RBP16.28■□□□□ 0.2
TRAF4-215ENST00000584944 SAMD1Q6SPF0 538 aaPredicted RBP16.28■□□□□ 0.2
TRAF4-215ENST00000584944 NFXL1Q6ZNB6 911 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 ANKRD23Q86SG2 305 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 SPICE1Q8N0Z3 855 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 TTC14Q96N46 770 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 NEK1Q96PY6 1258 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 PARK7Q99497 189 aaKnown RBP16.28■□□□□ 0.2
TRAF4-215ENST00000584944 TCP11L1Q9NUJ3 509 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 ZSWIM5Q9P217 1185 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 AGTPBP1Q9UPW5 1226 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 MTMR7Q9Y216 660 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 TMX2Q9Y320 296 aa16.28■□□□□ 0.2
TRAF4-215ENST00000584944 LAMA4Q16363 1823 aa16.27■□□□□ 0.2
TRAF4-215ENST00000584944 BTBD19C9JJ37 291 aa16.27■□□□□ 0.2
TRAF4-215ENST00000584944 TOP1P11387 765 aaKnown RBP16.27■□□□□ 0.2
TRAF4-215ENST00000584944 TMEM67Q5HYA8 995 aa16.27■□□□□ 0.2
TRAF4-215ENST00000584944 IFIT1BQ5T764 474 aaKnown RBP16.27■□□□□ 0.2
TRAF4-215ENST00000584944 LRRC47Q8N1G4 583 aaKnown RBP16.27■□□□□ 0.2
TRAF4-215ENST00000584944 JAKMIP1Q96N16 626 aaKnown RBP16.27■□□□□ 0.2
TRAF4-215ENST00000584944 USP26Q9BXU7 913 aa16.27■□□□□ 0.2
TRAF4-215ENST00000584944 VCPKMTQ9H867 229 aa16.27■□□□□ 0.2
TRAF4-215ENST00000584944 ZCCHC17Q9NP64 241 aaKnown RBP16.27■□□□□ 0.2
TRAF4-215ENST00000584944 SYNPO2Q9UMS6 1093 aa16.27■□□□□ 0.2
TRAF4-215ENST00000584944 CTDP1Q9Y5B0 961 aaPredicted RBP16.27■□□□□ 0.2
TRAF4-215ENST00000584944 RBBP6Q7Z6E9 1792 aaKnown RBP16.27■□□□□ 0.2
TRAF4-215ENST00000584944 TNKSO95271 1327 aa16.26■□□□□ 0.19
TRAF4-215ENST00000584944 PRC1O43663 620 aa16.26■□□□□ 0.19
TRAF4-215ENST00000584944 TLR2O60603 784 aa16.26■□□□□ 0.19
TRAF4-215ENST00000584944 ARHGEF6Q15052 776 aa16.26■□□□□ 0.19
TRAF4-215ENST00000584944 CCDC96Q2M329 555 aa16.26■□□□□ 0.19
TRAF4-215ENST00000584944 SH3D19Q5HYK7 790 aa16.26■□□□□ 0.19
TRAF4-215ENST00000584944 DGKHQ86XP1 1220 aa16.26■□□□□ 0.19
TRAF4-215ENST00000584944 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.26■□□□□ 0.19
TRAF4-215ENST00000584944 IGKV6D-41A0A0C4DH26 115 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 A0A1W2PRG0 241 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 USP17L15C9J2P7 530 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 USP17L13C9JLJ4 530 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 USP17L11C9JVI0 530 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 USP17L18D6R9N7 530 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 USP17L22D6RA61 530 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 USP17L17D6RBQ6 530 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 USP17L19D6RCP7 530 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 USP17L20D6RJB6 530 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 VCAM1P19320 739 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 SLC1A4P43007 532 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 USP17L24Q0WX57 530 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 WTAPQ15007 396 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 C8orf34Q49A92 452 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 BLOC1S2Q6QNY1 142 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 ZNF333Q96JL9 665 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 RPAP3Q9H6T3 665 aaPredicted RBP16.25■□□□□ 0.19
TRAF4-215ENST00000584944 IL17RBQ9NRM6 502 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 EMILIN3Q9NT22 766 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 PCDH10Q9P2E7 1040 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 SLC45A1Q9Y2W3 748 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 TACC3Q9Y6A5 838 aa16.25■□□□□ 0.19
TRAF4-215ENST00000584944 CCDC69A6NI79 296 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms