RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 SHHQ15465 462 aa26.52■■□□□ 1.84
SHMT1-210ENST00000583780 KIAA1755Q5JYT7 1200 aa26.52■■□□□ 1.84
SHMT1-210ENST00000583780 DPP9Q86TI2 863 aa26.52■■□□□ 1.84
SHMT1-210ENST00000583780 HOXC10Q9NYD6 342 aa26.52■■□□□ 1.84
SHMT1-210ENST00000583780 ADORA2AP29274 412 aa26.51■■□□□ 1.83
SHMT1-210ENST00000583780 ANO1Q5XXA6 986 aa26.51■■□□□ 1.83
SHMT1-210ENST00000583780 TMED8Q6PL24 325 aaPredicted RBP26.51■■□□□ 1.83
SHMT1-210ENST00000583780 ARRDC4Q8NCT1 418 aa26.51■■□□□ 1.83
SHMT1-210ENST00000583780 ZNF236Q9UL36 1845 aa26.51■■□□□ 1.83
SHMT1-210ENST00000583780 PRAMEF19Q5SWL8 479 aa26.5■■□□□ 1.83
SHMT1-210ENST00000583780 C9orf50Q5SZB4 431 aa26.5■■□□□ 1.83
SHMT1-210ENST00000583780 SPATC1LQ9H0A9 340 aa26.5■■□□□ 1.83
SHMT1-210ENST00000583780 ATP11BQ9Y2G3 1177 aa26.5■■□□□ 1.83
SHMT1-210ENST00000583780 EYSQ5T1H1 3165 aa26.5■■□□□ 1.83
SHMT1-210ENST00000583780 POLR3DP05423 398 aaPredicted RBP26.49■■□□□ 1.83
SHMT1-210ENST00000583780 ERCC3P19447 782 aa26.49■■□□□ 1.83
SHMT1-210ENST00000583780 SNX17Q15036 470 aa26.49■■□□□ 1.83
SHMT1-210ENST00000583780 SIAH1Q8IUQ4 282 aa26.49■■□□□ 1.83
SHMT1-210ENST00000583780 SHCBP1Q8NEM2 672 aa26.49■■□□□ 1.83
SHMT1-210ENST00000583780 PRKAG2Q9UGJ0 569 aa26.49■■□□□ 1.83
SHMT1-210ENST00000583780 SEPT4O43236 478 aa26.48■■□□□ 1.83
SHMT1-210ENST00000583780 ZNF697Q5TEC3 545 aa26.48■■□□□ 1.83
SHMT1-210ENST00000583780 CDX2Q99626 313 aaPredicted RBP26.48■■□□□ 1.83
SHMT1-210ENST00000583780 SEMA6BQ9H3T3 888 aa26.48■■□□□ 1.83
SHMT1-210ENST00000583780 VCANP13611 3396 aa26.48■■□□□ 1.83
SHMT1-210ENST00000583780 SH3RF1Q7Z6J0 888 aa26.47■■□□□ 1.83
SHMT1-210ENST00000583780 BADQ92934 168 aa26.47■■□□□ 1.83
SHMT1-210ENST00000583780 A0A0G2JMZ2 1700 aa26.47■■□□□ 1.83
SHMT1-210ENST00000583780 NAV1Q8NEY1 1877 aa26.47■■□□□ 1.83
SHMT1-210ENST00000583780 MAGEB6P1A0A0J9YX57 407 aa26.46■■□□□ 1.83
SHMT1-210ENST00000583780 RLBP1P12271 317 aa26.46■■□□□ 1.83
SHMT1-210ENST00000583780 DSG3P32926 999 aa26.46■■□□□ 1.83
SHMT1-210ENST00000583780 PRUNE2Q8WUY3 3088 aa26.45■■□□□ 1.83
SHMT1-210ENST00000583780 TRIM43BA6NCK2 446 aa26.45■■□□□ 1.82
SHMT1-210ENST00000583780 ADCYAP1R1P41586 468 aa26.45■■□□□ 1.82
SHMT1-210ENST00000583780 TRIM60Q495X7 471 aa26.45■■□□□ 1.82
SHMT1-210ENST00000583780 TRIM43Q96BQ3 446 aaPredicted RBP26.45■■□□□ 1.82
SHMT1-210ENST00000583780 MCM9Q9NXL9 1143 aa26.45■■□□□ 1.82
SHMT1-210ENST00000583780 PARP14Q460N5 1801 aa26.44■■□□□ 1.82
SHMT1-210ENST00000583780 KBTBD13C9JR72 458 aa26.44■■□□□ 1.82
SHMT1-210ENST00000583780 MPHOSPH10O00566 681 aaKnown RBP26.44■■□□□ 1.82
SHMT1-210ENST00000583780 LRRC41Q15345 812 aa26.44■■□□□ 1.82
SHMT1-210ENST00000583780 C1orf53Q5VUE5 145 aa26.44■■□□□ 1.82
SHMT1-210ENST00000583780 CEP85Q6P2H3 762 aa26.44■■□□□ 1.82
SHMT1-210ENST00000583780 AACSQ86V21 672 aa26.44■■□□□ 1.82
SHMT1-210ENST00000583780 TANGO6Q9C0B7 1094 aa26.44■■□□□ 1.82
SHMT1-210ENST00000583780 PDLIM7Q9NR12 457 aa26.44■■□□□ 1.82
SHMT1-210ENST00000583780 EXOC6BQ9Y2D4 811 aa26.44■■□□□ 1.82
SHMT1-210ENST00000583780 CYP2D6P10635 497 aa26.43■■□□□ 1.82
SHMT1-210ENST00000583780 PDE6AP16499 860 aa26.43■■□□□ 1.82
SHMT1-210ENST00000583780 SLC9C2Q5TAH2 1124 aa26.43■■□□□ 1.82
SHMT1-210ENST00000583780 ABRAQ8N0Z2 381 aa26.43■■□□□ 1.82
SHMT1-210ENST00000583780 SLC44A5Q8NCS7 719 aa26.43■■□□□ 1.82
SHMT1-210ENST00000583780 SDR42E1Q8WUS8 393 aa26.43■■□□□ 1.82
SHMT1-210ENST00000583780 FERMT2Q96AC1 680 aa26.43■■□□□ 1.82
SHMT1-210ENST00000583780 MAML3Q96JK9 1138 aa26.43■■□□□ 1.82
SHMT1-210ENST00000583780 TTYH1Q9H313 450 aaPredicted RBP26.43■■□□□ 1.82
SHMT1-210ENST00000583780 MROH8Q9H579 483 aa26.43■■□□□ 1.82
SHMT1-210ENST00000583780 DCP1AQ9NPI6 582 aaPredicted RBP26.43■■□□□ 1.82
SHMT1-210ENST00000583780 TCRBV5S4A2TA0A5A2 114 aa26.42■■□□□ 1.82
SHMT1-210ENST00000583780 ITGB8P26012 769 aa26.42■■□□□ 1.82
SHMT1-210ENST00000583780 MB21D1Q8N884 522 aa26.42■■□□□ 1.82
SHMT1-210ENST00000583780 CRNKL1Q9BZJ0 848 aaKnown RBP26.42■■□□□ 1.82
SHMT1-210ENST00000583780 PRDM5Q9NQX1 630 aaPredicted RBP26.42■■□□□ 1.82
SHMT1-210ENST00000583780 COL11A1P12107 1806 aaPredicted RBP26.42■■□□□ 1.82
SHMT1-210ENST00000583780 CDH23Q9H251 3354 aa26.41■■□□□ 1.82
SHMT1-210ENST00000583780 MYH8P13535 1937 aa26.41■■□□□ 1.82
SHMT1-210ENST00000583780 FAM47AQ5JRC9 791 aa26.41■■□□□ 1.82
SHMT1-210ENST00000583780 TMEM179Q6ZVK1 233 aa26.41■■□□□ 1.82
SHMT1-210ENST00000583780 NCAPG2Q86XI2 1143 aa26.41■■□□□ 1.82
SHMT1-210ENST00000583780 ATG4CQ96DT6 458 aa26.41■■□□□ 1.82
SHMT1-210ENST00000583780 DYNLL2Q96FJ2 89 aa26.41■■□□□ 1.82
SHMT1-210ENST00000583780 TMX2Q9Y320 296 aa26.41■■□□□ 1.82
SHMT1-210ENST00000583780 ZNF532Q9HCE3 1301 aa26.4■■□□□ 1.82
SHMT1-210ENST00000583780 MYCNP04198 464 aaPredicted RBP26.4■■□□□ 1.82
SHMT1-210ENST00000583780 SMAD3P84022 425 aaKnown RBP26.4■■□□□ 1.82
SHMT1-210ENST00000583780 PLS1Q14651 629 aa26.4■■□□□ 1.82
SHMT1-210ENST00000583780 TTF1Q15361 905 aaPredicted RBP26.4■■□□□ 1.82
SHMT1-210ENST00000583780 CLEC10AQ8IUN9 316 aa26.4■■□□□ 1.82
SHMT1-210ENST00000583780 ITPRIPQ8IWB1 547 aa26.4■■□□□ 1.82
SHMT1-210ENST00000583780 LCORLQ8N3X6 602 aa26.4■■□□□ 1.82
SHMT1-210ENST00000583780 IL1RAPL2Q9NP60 686 aa26.4■■□□□ 1.82
SHMT1-210ENST00000583780 SLC5A4Q9NY91 659 aa26.4■■□□□ 1.82
SHMT1-210ENST00000583780 ADAMTS5Q9UNA0 930 aa26.4■■□□□ 1.82
SHMT1-210ENST00000583780 SMIM22K7EJ46 135 aa26.39■■□□□ 1.82
SHMT1-210ENST00000583780 TLE2Q04725 743 aa26.39■■□□□ 1.82
SHMT1-210ENST00000583780 TMEM132BQ14DG7 1078 aa26.39■■□□□ 1.82
SHMT1-210ENST00000583780 SPICE1Q8N0Z3 855 aa26.39■■□□□ 1.82
SHMT1-210ENST00000583780 PHF24Q9UPV7 400 aa26.39■■□□□ 1.82
SHMT1-210ENST00000583780 BAZ2AQ9UIF9 1905 aaKnown RBP26.39■■□□□ 1.81
SHMT1-210ENST00000583780 FLOT1O75955 427 aa26.38■■□□□ 1.81
SHMT1-210ENST00000583780 AKR1B1P15121 316 aa26.38■■□□□ 1.81
SHMT1-210ENST00000583780 ERC1Q8IUD2 1116 aa26.38■■□□□ 1.81
SHMT1-210ENST00000583780 MAFAQ8NHW3 353 aaPredicted RBP26.38■■□□□ 1.81
SHMT1-210ENST00000583780 MYLIPQ8WY64 445 aa26.38■■□□□ 1.81
SHMT1-210ENST00000583780 VCPKMTQ9H867 229 aa26.38■■□□□ 1.81
SHMT1-210ENST00000583780 PLXNA1Q9UIW2 1896 aa26.38■■□□□ 1.81
SHMT1-210ENST00000583780 FCER1AP12319 257 aa26.37■■□□□ 1.81
SHMT1-210ENST00000583780 EPHB4P54760 987 aa26.37■■□□□ 1.81
SHMT1-210ENST00000583780 HNRNPUQ00839 825 aaKnown RBP eCLIP26.37■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms