RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	AKNAD1	Q5T1N1	836 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	DRC1	Q96MC2	740 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TUBB2B	Q9BVA1	445 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TDO2	P48775	406 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	USP14	P54578	494 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TCIRG1	Q13488	830 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ISCA1	Q9BUE6	129 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	AATF	Q9NY61	560 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MKRN1	Q9UHC7	482 aa	Known RBP	10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	HPCAL4	Q9UM19	191 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	RIPOR2	Q9Y4F9	1068 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PKD1L3	Q7Z443	1732 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	GLI3	P10071	1580 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TCRBV5S4A2T	A0A5A2	114 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ERICH2	A1L162	156 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PATL2	C9JE40	543 aa	Known RBP	10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SMIM22	K7EJ46	135 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	IRX3	P78415	501 aa	Predicted RBP	10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	UBXN1	Q04323	297 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TTF1	Q15361	905 aa	Predicted RBP	10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ICE2	Q659A1	982 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ANKLE2	Q86XL3	938 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TTLL11	Q8NHH1	800 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CCDC51	Q96ER9	411 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MED4	Q9NPJ6	270 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	EPN1	Q9Y6I3	576 aa	Predicted RBP	10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	KCNJ18	B7U540	433 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ZNF185	O15231	689 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MYBL2	P10244	700 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	GGCX	P38435	758 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CORO7	P57737	925 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MRPS25	P82663	173 aa	Known RBP	10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	KCNJ12	Q14500	433 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	WDR93	Q6P2C0	686 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CTR9	Q6PD62	1173 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SH3RF1	Q7Z6J0	888 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ZNF654	Q8IZM8	581 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MIGA1	Q8NAN2	632 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SMARCC1	Q92922	1105 aa	Predicted RBP	10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MST1R	Q04912	1400 aa		10.79	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PRPF6	O94906	941 aa	Known RBP	10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	NDUFA10	O95299	355 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	STIM1	Q13586	685 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TRAPPC11	Q7Z392	1133 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MICALL1	Q8N3F8	863 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	FANCB	Q8NB91	859 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CAGE1	Q8TC20	777 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	NELFB	Q8WX92	580 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	EHD4	Q9H223	541 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	GDA	Q9Y2T3	454 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	JRKL	Q9Y4A0	524 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	XDH	P47989	1333 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TRIM49B	A6NDI0	452 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	GSG1L2	A8MUP6	293 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PPFIA4	O75335	1185 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SART3	Q15020	963 aa	Known RBP	10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CCDC122	Q5T0U0	273 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TTC19	Q6DKK2	380 aa	Predicted RBP	10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	LCORL	Q8N3X6	602 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MSL3	Q8N5Y2	521 aa	Known RBP	10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	GSDMA	Q96QA5	445 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	KRT23	Q9C075	422 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	GNL3L	Q9NVN8	582 aa	Known RBP	10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	LIMA1	Q9UHB6	759 aa	Known RBP	10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SLC4A4	Q9Y6R1	1079 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ITIH6	Q6UXX5	1313 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	BAZ2B	Q9UIF8	2168 aa	Known RBP	10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CHD4	Q14839	1912 aa		10.78	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TTC26	A0AVF1	554 aa		10.77	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MINDY4B	A8MYZ0	360 aa		10.77	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TUBB4B	P68371	445 aa		10.77	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TCP11X2	Q5H9J9	407 aa		10.77	□□□□□ -0.68
PPP4R1-222	ENST00000582594	EEF2KMT	Q96G04	330 aa		10.77	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MYH6	P13533	1939 aa		10.77	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PCCA	P05165	728 aa	Predicted RBP	10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CSF1R	P07333	972 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	FECH	P22830	423 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	KRT2	P35908	639 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	HERVK_113	P62684	666 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	C2orf54	Q08AI8	447 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PAK1	Q13153	545 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PPM1E	Q8WY54	764 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CRACR2A	Q9BSW2	395 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	MYO1A	Q9UBC5	1043 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	SAR1B	Q9Y6B6	198 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	ANKRD18B	A2A2Z9	1011 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	SEMA3E	O15041	775 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CCT5	P48643	541 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PTGDR	Q13258	359 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	FKBP15	Q5T1M5	1219 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	KIAA1328	Q86T90	577 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	GPIHBP1	Q8IV16	184 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CNNM2	Q9H8M5	875 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594		V9GY48	417 aa	Predicted RBP	10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	ABCC12	Q96J65	1359 aa		10.77	□□□□□ -0.69
PPP4R1-222	ENST00000582594	ATRN	O75882	1429 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	CDHR2	Q9BYE9	1310 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	PLEKHA8P1	O95397	391 aa		10.76	□□□□□ -0.69
PPP4R1-222	ENST00000582594	HLF	Q16534	295 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms