RNA–Protein interactions for RNA: ENST00000582308.1

RFFL-210, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-210ENST00000582308 TMX2Q9Y320 296 aa11.17□□□□□ -0.62
RFFL-210ENST00000582308 TMEM88BA6NKF7 163 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 F5H6K3 240 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 LARGE1O95461 756 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 PDIA3P30101 505 aaKnown RBP11.16□□□□□ -0.62
RFFL-210ENST00000582308 PPATQ06203 517 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 KLRC3Q07444 240 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 TROAPQ12815 778 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 ME3Q16798 604 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 RASGRP2Q7LDG7 609 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 CATIPQ7Z7H3 387 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 RAB11FIP4Q86YS3 637 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 CHMP4CQ96CF2 233 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 OPTNQ96CV9 577 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 OTUD5Q96G74 571 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 ZNF274Q96GC6 653 aaPredicted RBP11.16□□□□□ -0.62
RFFL-210ENST00000582308 MYL10Q9BUA6 226 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 TBC1D2Q9BYX2 928 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 KIAA1683Q9H0B3 1180 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 AS3MTQ9HBK9 375 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 SYNPO2Q9UMS6 1093 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 SLC12A7Q9Y666 1083 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 TLL2Q9Y6L7 1015 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 PARP14Q460N5 1801 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 LOC285556D6RIA3 1793 aa11.16□□□□□ -0.62
RFFL-210ENST00000582308 TRIM75PA6NK02 468 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 GOLGA8BA8MQT2 603 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 USP17L10C9JJH3 530 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 IRF6O14896 467 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 ZBTB43O43298 467 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 NDUFB10O96000 172 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 RXRAP19793 462 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 MCM2P49736 904 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 BACE1P56817 501 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 PPIL2Q13356 520 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 MTMR2Q13614 643 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 ZYXQ15942 572 aaKnown RBP11.15□□□□□ -0.62
RFFL-210ENST00000582308 GMCL1P1Q8NEA9 526 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 WNK4Q96J92 1243 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 TMX3Q96JJ7 454 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 FEZ1Q99689 392 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 VCPKMTQ9H867 229 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 EMILIN3Q9NT22 766 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 FAM217BQ9NTX9 383 aaPredicted RBP11.15□□□□□ -0.62
RFFL-210ENST00000582308 NAP1L2Q9ULW6 460 aaPredicted RBP11.15□□□□□ -0.62
RFFL-210ENST00000582308 MTMR7Q9Y216 660 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 RLFQ13129 1914 aa11.15□□□□□ -0.62
RFFL-210ENST00000582308 SMCHD1A6NHR9 2005 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 CXCL11O14625 94 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 PFKFB2O60825 505 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 DDAH1O94760 285 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 SNHG28P0DPA3 235 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 PDHBP11177 359 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 APLP1P51693 650 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 CCT2P78371 535 aaKnown RBP11.14□□□□□ -0.63
RFFL-210ENST00000582308 STK3Q13188 491 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 DGKZQ13574 1117 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 GRM4Q14833 912 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 SLFN13Q68D06 897 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 USP17L2Q6R6M4 530 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 SYNE3Q6ZMZ3 975 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 MICU3Q86XE3 530 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 CCDC144CPQ8IYA2 1237 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 SPICE1Q8N0Z3 855 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 NECAB1Q8N987 351 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 FANCBQ8NB91 859 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 NUP133Q8WUM0 1156 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 ZSCAN31Q96LW9 406 aaPredicted RBP11.14□□□□□ -0.63
RFFL-210ENST00000582308 MAP3K14Q99558 947 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 SH2D4AQ9H788 454 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 NCOA5Q9HCD5 579 aaKnown RBP11.14□□□□□ -0.63
RFFL-210ENST00000582308 GOPCQ9HD26 462 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 ABT1Q9ULW3 272 aaKnown RBP11.14□□□□□ -0.63
RFFL-210ENST00000582308 KCNH4Q9UQ05 1017 aa11.14□□□□□ -0.63
RFFL-210ENST00000582308 PALM3A6NDB9 673 aaPredicted RBP11.13□□□□□ -0.63
RFFL-210ENST00000582308 C19orf81C9J6K1 198 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 RAD21O60216 631 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 CALM1P0DP23 149 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 CALM2P0DP24 149 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 CALM3P0DP25 149 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 CDC27P30260 824 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 ZNF157P51786 506 aaPredicted RBP11.13□□□□□ -0.63
RFFL-210ENST00000582308 RCAN1P53805 252 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 HMGCS2P54868 508 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 ST3GAL1Q11201 340 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 RTN1Q16799 776 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 SH3D19Q5HYK7 790 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 SPRYD7Q5W111 196 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 RGMBQ6NW40 437 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 RASAL3Q86YV0 1011 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 STAG2Q8N3U4 1231 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 DCAF4Q8WV16 495 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 GMCL1Q96IK5 515 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 C12orf42Q96LP6 360 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 NUP88Q99567 741 aaPredicted RBP11.13□□□□□ -0.63
RFFL-210ENST00000582308 SLKQ9H2G2 1235 aaPredicted RBP11.13□□□□□ -0.63
RFFL-210ENST00000582308 MAD2L2Q9UI95 211 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 NID2Q14112 1375 aa11.13□□□□□ -0.63
RFFL-210ENST00000582308 COL11A1P12107 1806 aaPredicted RBP11.12□□□□□ -0.63
RFFL-210ENST00000582308 A0A0G2JLL6 359 aaPredicted RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms