RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 KIAA1755Q5JYT7 1200 aa28.48■■■□□ 2.15
SHMT1-206ENST00000579558 LPAR1Q92633 364 aa28.48■■■□□ 2.15
SHMT1-206ENST00000579558 GNL3Q9BVP2 549 aaKnown RBP eCLIP28.48■■■□□ 2.15
SHMT1-206ENST00000579558 TANGO6Q9C0B7 1094 aa28.48■■■□□ 2.15
SHMT1-206ENST00000579558 VCPKMTQ9H867 229 aa28.48■■■□□ 2.15
SHMT1-206ENST00000579558 PRDM1O75626 825 aa28.47■■■□□ 2.15
SHMT1-206ENST00000579558 SLC3A2P08195 630 aaKnown RBP28.47■■■□□ 2.15
SHMT1-206ENST00000579558 VPS53Q5VIR6 699 aa28.47■■■□□ 2.15
SHMT1-206ENST00000579558 POTEEQ6S8J3 1075 aa28.47■■■□□ 2.15
SHMT1-206ENST00000579558 ZNF444Q8N0Y2 327 aaPredicted RBP28.47■■■□□ 2.15
SHMT1-206ENST00000579558 SLAIN1Q8ND83 568 aa28.47■■■□□ 2.15
SHMT1-206ENST00000579558 BIN2Q9UBW5 565 aaPredicted RBP28.47■■■□□ 2.15
SHMT1-206ENST00000579558 RABGAP1Q9Y3P9 1069 aa28.47■■■□□ 2.15
SHMT1-206ENST00000579558 ADCY3O60266 1144 aa28.46■■■□□ 2.15
SHMT1-206ENST00000579558 PDE4BQ07343 736 aa28.46■■■□□ 2.15
SHMT1-206ENST00000579558 IRF5Q13568 498 aa28.46■■■□□ 2.15
SHMT1-206ENST00000579558 Q3C1V9 767 aa28.46■■■□□ 2.15
SHMT1-206ENST00000579558 SPICE1Q8N0Z3 855 aa28.46■■■□□ 2.15
SHMT1-206ENST00000579558 TNRC18O15417 2968 aaPredicted RBP28.46■■■□□ 2.15
SHMT1-206ENST00000579558 SPDYE16A6NNV3 312 aaPredicted RBP28.45■■■□□ 2.14
SHMT1-206ENST00000579558 SDSP20132 328 aa28.45■■■□□ 2.14
SHMT1-206ENST00000579558 LBX2Q6XYB7 198 aa28.45■■■□□ 2.14
SHMT1-206ENST00000579558 CCAR1Q8IX12 1150 aaKnown RBP28.45■■■□□ 2.14
SHMT1-206ENST00000579558 CNMDO75829 334 aa28.44■■■□□ 2.14
SHMT1-206ENST00000579558 PDE4AP27815 886 aa28.44■■■□□ 2.14
SHMT1-206ENST00000579558 MAPK4P31152 587 aa28.44■■■□□ 2.14
SHMT1-206ENST00000579558 COG2Q14746 738 aa28.44■■■□□ 2.14
SHMT1-206ENST00000579558 GOPCQ9HD26 462 aa28.44■■■□□ 2.14
SHMT1-206ENST00000579558 KIAA0100Q14667 2235 aaKnown RBP28.43■■■□□ 2.14
SHMT1-206ENST00000579558 WDR46O15213 610 aaKnown RBP28.43■■■□□ 2.14
SHMT1-206ENST00000579558 ELNP15502 786 aa28.43■■■□□ 2.14
SHMT1-206ENST00000579558 UBXN2AP68543 259 aa28.43■■■□□ 2.14
SHMT1-206ENST00000579558 ZNF589Q86UQ0 364 aaPredicted RBP28.43■■■□□ 2.14
SHMT1-206ENST00000579558 PORCNQ9H237 461 aa28.43■■■□□ 2.14
SHMT1-206ENST00000579558 HOXC10Q9NYD6 342 aa28.43■■■□□ 2.14
SHMT1-206ENST00000579558 CCDC171Q6TFL3 1326 aa28.43■■■□□ 2.14
SHMT1-206ENST00000579558 RAD21O60216 631 aa28.42■■■□□ 2.14
SHMT1-206ENST00000579558 CCNA1P78396 465 aa28.42■■■□□ 2.14
SHMT1-206ENST00000579558 MTFR1Q15390 333 aa28.42■■■□□ 2.14
SHMT1-206ENST00000579558 ALX1Q15699 326 aa28.42■■■□□ 2.14
SHMT1-206ENST00000579558 PXYLP1Q8TE99 480 aa28.42■■■□□ 2.14
SHMT1-206ENST00000579558 NYAP2Q9P242 653 aa28.42■■■□□ 2.14
SHMT1-206ENST00000579558 GJD2Q9UKL4 321 aa28.42■■■□□ 2.14
SHMT1-206ENST00000579558 CTDSPL2Q05D32 466 aa28.41■■■□□ 2.14
SHMT1-206ENST00000579558 CWC22Q9HCG8 908 aaKnown RBP28.41■■■□□ 2.14
SHMT1-206ENST00000579558 DIAPH3Q9NSV4 1193 aa28.41■■■□□ 2.14
SHMT1-206ENST00000579558 BTBD7Q9P203 1132 aa28.41■■■□□ 2.14
SHMT1-206ENST00000579558 PLXNB2O15031 1838 aa28.41■■■□□ 2.14
SHMT1-206ENST00000579558 RLFQ13129 1914 aa28.4■■■□□ 2.14
SHMT1-206ENST00000579558 IGKV6D-41A0A0C4DH26 115 aa28.4■■■□□ 2.14
SHMT1-206ENST00000579558 FLOT1O75955 427 aa28.4■■■□□ 2.14
SHMT1-206ENST00000579558 TSPY3P0CV98 308 aa28.4■■■□□ 2.14
SHMT1-206ENST00000579558 TSPY8P0CW00 308 aa28.4■■■□□ 2.14
SHMT1-206ENST00000579558 EN2P19622 333 aaPredicted RBP28.4■■■□□ 2.14
SHMT1-206ENST00000579558 PLIN4Q96Q06 1357 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 HIP1O00291 1037 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 HSPD1P10809 573 aaKnown RBP28.39■■■□□ 2.14
SHMT1-206ENST00000579558 DSG3P32926 999 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 MFAP1P55081 439 aaKnown RBP28.39■■■□□ 2.14
SHMT1-206ENST00000579558 FAM47AQ5JRC9 791 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 GPR142Q7Z601 462 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 PLEKHH3Q7Z736 793 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 NEDD1Q8NHV4 660 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 SOCS4Q8WXH5 440 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 CEP95Q96GE4 821 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 NUDT12Q9BQG2 462 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 CLIP2Q9UDT6 1046 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 ANAPC4Q9UJX5 808 aa28.39■■■□□ 2.14
SHMT1-206ENST00000579558 MYH4Q9Y623 1939 aa28.39■■■□□ 2.13
SHMT1-206ENST00000579558 A0A0G2JMZ2 1700 aa28.38■■■□□ 2.13
SHMT1-206ENST00000579558 FGAP02671 866 aa28.38■■■□□ 2.13
SHMT1-206ENST00000579558 INHAP05111 366 aa28.38■■■□□ 2.13
SHMT1-206ENST00000579558 CCL5P13501 91 aa28.38■■■□□ 2.13
SHMT1-206ENST00000579558 TFAP4Q01664 338 aa28.38■■■□□ 2.13
SHMT1-206ENST00000579558 SAMD1Q6SPF0 538 aaPredicted RBP28.38■■■□□ 2.13
SHMT1-206ENST00000579558 MTMR4Q9NYA4 1195 aa28.38■■■□□ 2.13
SHMT1-206ENST00000579558 DDX52Q9Y2R4 599 aaKnown RBP eCLIP28.38■■■□□ 2.13
SHMT1-206ENST00000579558 TTC22Q5TAA0 569 aa28.37■■■□□ 2.13
SHMT1-206ENST00000579558 WDR78Q5VTH9 848 aa28.37■■■□□ 2.13
SHMT1-206ENST00000579558 CWC27Q6UX04 472 aaKnown RBP28.37■■■□□ 2.13
SHMT1-206ENST00000579558 ATG4CQ96DT6 458 aa28.37■■■□□ 2.13
SHMT1-206ENST00000579558 PARP14Q460N5 1801 aa28.36■■■□□ 2.13
SHMT1-206ENST00000579558 TTLL1O95922 423 aa28.36■■■□□ 2.13
SHMT1-206ENST00000579558 CYP2B6P20813 491 aa28.36■■■□□ 2.13
SHMT1-206ENST00000579558 FAM83BQ5T0W9 1011 aa28.36■■■□□ 2.13
SHMT1-206ENST00000579558 MB21D1Q8N884 522 aa28.36■■■□□ 2.13
SHMT1-206ENST00000579558 RNF208Q9H0X6 261 aa28.36■■■□□ 2.13
SHMT1-206ENST00000579558 INCENPQ9NQS7 918 aa28.36■■■□□ 2.13
SHMT1-206ENST00000579558 ZMYM6O95789 1325 aa28.36■■■□□ 2.13
SHMT1-206ENST00000579558 F5H6K3 240 aa28.35■■■□□ 2.13
SHMT1-206ENST00000579558 KLRC3Q07444 240 aa28.35■■■□□ 2.13
SHMT1-206ENST00000579558 UNC93B1Q9H1C4 597 aa28.35■■■□□ 2.13
SHMT1-206ENST00000579558 PDE4DIPQ5VU43 2346 aa28.35■■■□□ 2.13
SHMT1-206ENST00000579558 TSPY2A6NKD2 308 aa28.34■■■□□ 2.13
SHMT1-206ENST00000579558 NDUFB10O96000 172 aa28.34■■■□□ 2.13
SHMT1-206ENST00000579558 GSPT1P15170 499 aaKnown RBP28.34■■■□□ 2.13
SHMT1-206ENST00000579558 MKL1Q969V6 931 aa28.34■■■□□ 2.13
SHMT1-206ENST00000579558 SPATC1LQ9H0A9 340 aa28.34■■■□□ 2.13
SHMT1-206ENST00000579558 FBXO28Q9NVF7 368 aa28.34■■■□□ 2.13
SHMT1-206ENST00000579558 TACC3Q9Y6A5 838 aa28.34■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms