RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 FAM178BQ8IXR5 827 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 ST13P5Q8NFI4 369 aaPredicted RBP7.48□□□□□ -1.21
VPS53-219ENST00000576019 SEC31BQ9NQW1 1179 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 FMN2Q9NZ56 1722 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 TUBGCP6Q96RT7 1819 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 SBNO1A3KN83 1393 aa7.47□□□□□ -1.21
VPS53-219ENST00000576019 BRD4O60885 1362 aaPredicted RBP7.47□□□□□ -1.21
VPS53-219ENST00000576019 A0A087X0B3 334 aa7.47□□□□□ -1.21
VPS53-219ENST00000576019 SASH3O75995 380 aa7.47□□□□□ -1.21
VPS53-219ENST00000576019 SCGB1D2O95969 90 aa7.47□□□□□ -1.21
VPS53-219ENST00000576019 SOX5P35711 763 aa7.47□□□□□ -1.21
VPS53-219ENST00000576019 CBX2Q14781 532 aaPredicted RBP7.47□□□□□ -1.21
VPS53-219ENST00000576019 C4orf46Q504U0 113 aa7.47□□□□□ -1.21
VPS53-219ENST00000576019 RASIP1Q5U651 963 aa7.47□□□□□ -1.21
VPS53-219ENST00000576019 MPHOSPH6Q99547 160 aaKnown RBP7.47□□□□□ -1.21
VPS53-219ENST00000576019 OSMRQ99650 979 aa7.47□□□□□ -1.21
VPS53-219ENST00000576019 BCCIPQ9P287 314 aaKnown RBP eCLIP7.47□□□□□ -1.21
VPS53-219ENST00000576019 WASF2Q9Y6W5 498 aa7.47□□□□□ -1.21
VPS53-219ENST00000576019 LRRC37A3O60309 1634 aa7.46□□□□□ -1.21
VPS53-219ENST00000576019 SHTN1A0MZ66 631 aa7.46□□□□□ -1.22
VPS53-219ENST00000576019 MMP20O60882 483 aa7.46□□□□□ -1.22
VPS53-219ENST00000576019 IMPDH2P12268 514 aa7.46□□□□□ -1.22
VPS53-219ENST00000576019 PMLP29590 882 aa7.46□□□□□ -1.22
VPS53-219ENST00000576019 GPC1P35052 558 aa7.46□□□□□ -1.22
VPS53-219ENST00000576019 SLC19A1P41440 591 aa7.46□□□□□ -1.22
VPS53-219ENST00000576019 FAAP100Q0VG06 881 aa7.46□□□□□ -1.22
VPS53-219ENST00000576019 PABPC4Q13310 644 aaKnown RBP eCLIP7.46□□□□□ -1.22
VPS53-219ENST00000576019 PERM1Q5SV97 790 aa7.46□□□□□ -1.22
VPS53-219ENST00000576019 NCAPG2Q86XI2 1143 aa7.46□□□□□ -1.22
VPS53-219ENST00000576019 REXO1Q8N1G1 1221 aaKnown RBP7.46□□□□□ -1.22
VPS53-219ENST00000576019 INSM2Q96T92 566 aaPredicted RBP7.46□□□□□ -1.22
VPS53-219ENST00000576019 BRD7Q9NPI1 651 aa7.46□□□□□ -1.22
VPS53-219ENST00000576019 COMMD10Q9Y6G5 202 aa7.46□□□□□ -1.22
VPS53-219ENST00000576019 MKI67P46013 3256 aaKnown RBP7.46□□□□□ -1.22
VPS53-219ENST00000576019 THSD7BQ9C0I4 1608 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 CRYBG1Q9Y4K1 1723 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 A0A1W2PQH9 124 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 UPK3BL1B0FP48 263 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 UPK3BL2E5RIL1 263 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 WNT7AO00755 349 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 KHNYNO15037 678 aaKnown RBP7.45□□□□□ -1.22
VPS53-219ENST00000576019 SH3BP5O60239 455 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 CAND2O75155 1236 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 KATNA1O75449 491 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 BPNT1O95861 308 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 KRT18P05783 430 aaKnown RBP7.45□□□□□ -1.22
VPS53-219ENST00000576019 RNF144AP50876 292 aaPredicted RBP7.45□□□□□ -1.22
VPS53-219ENST00000576019 ZNF157P51786 506 aaPredicted RBP7.45□□□□□ -1.22
VPS53-219ENST00000576019 WDR4P57081 412 aaKnown RBP7.45□□□□□ -1.22
VPS53-219ENST00000576019 SYCP2LQ5T4T6 812 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 RNF180Q86T96 592 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 CCDC84Q86UT8 332 aaPredicted RBP7.45□□□□□ -1.22
VPS53-219ENST00000576019 TCP11L2Q8N4U5 519 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 RBBP8NLQ8NC74 664 aaPredicted RBP7.45□□□□□ -1.22
VPS53-219ENST00000576019 OR13H1Q8NG92 308 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 ATL2Q8NHH9 583 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 HHIPQ96QV1 700 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 IRX2Q9BZI1 471 aaPredicted RBP7.45□□□□□ -1.22
VPS53-219ENST00000576019 UBA5Q9GZZ9 404 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 ZFYVE1Q9HBF4 777 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 PCDHB14Q9Y5E9 798 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 GJA3Q9Y6H8 435 aa7.45□□□□□ -1.22
VPS53-219ENST00000576019 SSH2Q76I76 1423 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 LTBP1Q14766 1721 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 A0A1W2PNR3 127 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 CILPO75339 1184 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 ITPKAP23677 461 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 TARSP26639 723 aaKnown RBP7.44□□□□□ -1.22
VPS53-219ENST00000576019 GUCY2FP51841 1108 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 MCL1Q07820 350 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 POU4F2Q12837 409 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 OS9Q13438 667 aaPredicted RBP7.44□□□□□ -1.22
VPS53-219ENST00000576019 PPP4R4Q6NUP7 873 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 LIAT1Q6ZQX7 453 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 TTC6Q86TZ1 520 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 SMAD5Q99717 465 aaKnown RBP7.44□□□□□ -1.22
VPS53-219ENST00000576019 APBA2Q99767 749 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 SPATA9Q9BWV2 254 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 ANTXR1Q9H6X2 564 aa7.44□□□□□ -1.22
VPS53-219ENST00000576019 POLMQ9NP87 494 aaPredicted RBP7.44□□□□□ -1.22
VPS53-219ENST00000576019 SPATA31C2B4DYI2 1134 aa7.43□□□□□ -1.22
VPS53-219ENST00000576019 RASGRP1O95267 797 aa7.43□□□□□ -1.22
VPS53-219ENST00000576019 LDHAP00338 332 aaKnown RBP7.43□□□□□ -1.22
VPS53-219ENST00000576019 PDE6BP35913 854 aa7.43□□□□□ -1.22
VPS53-219ENST00000576019 SAFB2Q14151 953 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS53-219ENST00000576019 SPRYD7Q5W111 196 aa7.43□□□□□ -1.22
VPS53-219ENST00000576019 WWC2Q6AWC2 1192 aa7.43□□□□□ -1.22
VPS53-219ENST00000576019 EEPD1Q7L9B9 569 aa7.43□□□□□ -1.22
VPS53-219ENST00000576019 C14orf80Q86SX3 495 aa7.43□□□□□ -1.22
VPS53-219ENST00000576019 C19orf47Q8N9M1 422 aaKnown RBP7.43□□□□□ -1.22
VPS53-219ENST00000576019 ASAP3Q8TDY4 903 aa7.43□□□□□ -1.22
VPS53-219ENST00000576019 ZNF669Q96BR6 464 aaPredicted RBP7.43□□□□□ -1.22
VPS53-219ENST00000576019 KLF16Q9BXK1 252 aaPredicted RBP7.43□□□□□ -1.22
VPS53-219ENST00000576019 ZCCHC2Q9C0B9 1178 aaKnown RBP7.43□□□□□ -1.22
VPS53-219ENST00000576019 ZNF576Q9H609 170 aa7.43□□□□□ -1.22
VPS53-219ENST00000576019 CHST12Q9NRB3 414 aa7.43□□□□□ -1.22
VPS53-219ENST00000576019 STRN4Q9NRL3 753 aa7.43□□□□□ -1.22
VPS53-219ENST00000576019 ADCY3O60266 1144 aa7.42□□□□□ -1.22
VPS53-219ENST00000576019 RARAP10276 462 aa7.42□□□□□ -1.22
VPS53-219ENST00000576019 MSX1P28360 303 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms