RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 GCLCP48506 637 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-214ENST00000575431 NOVP48745 357 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 IRX3P78415 501 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-214ENST00000575431 ATP2B2Q01814 1243 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 USP17L24Q0WX57 530 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 CRHR2Q13324 411 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 ARHGEF6Q15052 776 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 FAM47AQ5JRC9 791 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 RALYLQ86SE5 291 aaKnown RBP11.28□□□□□ -0.6
CCDC40-214ENST00000575431 DGKHQ86XP1 1220 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 GMCL1P1Q8NEA9 526 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 NCOA7Q8NI08 942 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 SMCR8Q8TEV9 937 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-214ENST00000575431 CLIP2Q9UDT6 1046 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 STX8Q9UNK0 236 aa11.28□□□□□ -0.6
CCDC40-214ENST00000575431 KDM4AO75164 1064 aa11.27□□□□□ -0.61
CCDC40-214ENST00000575431 VCAM1P19320 739 aa11.27□□□□□ -0.61
CCDC40-214ENST00000575431 ZYXQ15942 572 aaKnown RBP11.27□□□□□ -0.61
CCDC40-214ENST00000575431 TREML2Q5T2D2 321 aa11.27□□□□□ -0.61
CCDC40-214ENST00000575431 MTA3Q9BTC8 594 aa11.27□□□□□ -0.61
CCDC40-214ENST00000575431 INCENPQ9NQS7 918 aa11.27□□□□□ -0.61
CCDC40-214ENST00000575431 IL17RBQ9NRM6 502 aa11.27□□□□□ -0.61
CCDC40-214ENST00000575431 HOXC10Q9NYD6 342 aa11.27□□□□□ -0.61
CCDC40-214ENST00000575431 B4E1Z4 1266 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 E7EWF7 191 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 F5H6K3 240 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 SLC27A2O14975 620 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 FKTNO75072 461 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 TOP1P11387 765 aaKnown RBP11.26□□□□□ -0.61
CCDC40-214ENST00000575431 LBX1P52954 281 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 SP3Q02447 781 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 KLRC3Q07444 240 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 KRT32Q14532 448 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 COG2Q14746 738 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 SART3Q15020 963 aaKnown RBP11.26□□□□□ -0.61
CCDC40-214ENST00000575431 TSGA10IPQ3SY00 556 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 CREB3L3Q68CJ9 461 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 C17orf99Q6UX52 265 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 CATSPERGQ6ZRH7 1159 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 CLEC10AQ8IUN9 316 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 ANKS1AQ92625 1134 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 ERO1AQ96HE7 468 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 UBAC1Q9BSL1 405 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 ASCC2Q9H1I8 757 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-214ENST00000575431 ZSWIM5Q9P217 1185 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 GTF3C3Q9Y5Q9 886 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 TACC3Q9Y6A5 838 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 NEDD4P46934 1319 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 MYPNQ86TC9 1320 aa11.26□□□□□ -0.61
CCDC40-214ENST00000575431 MYH4Q9Y623 1939 aa11.25□□□□□ -0.61
CCDC40-214ENST00000575431 ERICH2A1L162 156 aa11.25□□□□□ -0.61
CCDC40-214ENST00000575431 CYP2C8P10632 490 aa11.25□□□□□ -0.61
CCDC40-214ENST00000575431 MCCP23508 829 aa11.25□□□□□ -0.61
CCDC40-214ENST00000575431 KIF22Q14807 665 aa11.25□□□□□ -0.61
CCDC40-214ENST00000575431 RCSD1Q6JBY9 416 aa11.25□□□□□ -0.61
CCDC40-214ENST00000575431 LBX2Q6XYB7 198 aa11.25□□□□□ -0.61
CCDC40-214ENST00000575431 ZNF296Q8WUU4 475 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-214ENST00000575431 GMCL1Q96IK5 515 aa11.25□□□□□ -0.61
CCDC40-214ENST00000575431 ZSCAN10Q96SZ4 725 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-214ENST00000575431 RPAP3Q9H6T3 665 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-214ENST00000575431 TSKSQ9UJT2 592 aa11.25□□□□□ -0.61
CCDC40-214ENST00000575431 RAD21O60216 631 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 NDUFB10O96000 172 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 GNRH1P01148 92 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 HMGB1P09429 215 aaKnown RBP11.24□□□□□ -0.61
CCDC40-214ENST00000575431 FDX1P10109 184 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 BCRP11274 1271 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 HSPA4P34932 840 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 HERVK_113P62684 666 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 DGKZQ13574 1117 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 FAM110CQ1W6H9 321 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 SLFN13Q68D06 897 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 LRRC47Q8N1G4 583 aaKnown RBP11.24□□□□□ -0.61
CCDC40-214ENST00000575431 TMTC2Q8N394 836 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 MB21D1Q8N884 522 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 KCNB2Q92953 911 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 P2RX7Q99572 595 aaKnown RBP11.24□□□□□ -0.61
CCDC40-214ENST00000575431 TMEM47Q9BQJ4 181 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 TANGO6Q9C0B7 1094 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 ADGRA2Q96PE1 1338 aa11.24□□□□□ -0.61
CCDC40-214ENST00000575431 NMT2O60551 498 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 PLA2G6O60733 806 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 FLOT1O75955 427 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 BMP3P12645 472 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 DSG3P32926 999 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 MCM5P33992 734 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 SLC1A4P43007 532 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 SPICE1Q8N0Z3 855 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 DCAF4Q8WV16 495 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 TMEM87BQ96K49 555 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 NEK1Q96PY6 1258 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 R3HDMLQ9H3Y0 253 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 KAT14Q9H8E8 782 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 MORF4L1Q9UBU8 362 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 CPA4Q9UI42 421 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 RABGAP1Q9Y3P9 1069 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 TNKSO95271 1327 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 WDR19Q8NEZ3 1342 aa11.23□□□□□ -0.61
CCDC40-214ENST00000575431 IFIT3O14879 490 aaKnown RBP11.22□□□□□ -0.61
CCDC40-214ENST00000575431 PSMA5P28066 241 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms